PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 408741 | ||||||||
Common Name | SELMODRAFT_408741 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | bHLH | ||||||||
Protein Properties | Length: 182aa MW: 20663.1 Da PI: 4.6764 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.3 | 0.00063 | 119 | 151 | 18 | 55 |
HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Lr+l+P + K e+L kA+eY++ Lq 408741 119 RQLRVLRRLIPDgN------KFHNEEMLDKAIEYVHFLQ 151 56677999999955......99999************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00353 | 0.0022 | 115 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.0E-7 | 116 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.01E-8 | 117 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MESRESLQST VVEEQSRGSV VVVAAEEERS NGGEEAEESG WTTYLDQQPL SLSPRVQEPQ 60 ARRPQKRSLA RQDSTLSVLS DASSGPLTDH RSQEQAGENI LKSLFNEDNE SEIDNAIERQ 120 LRVLRRLIPD GNKFHNEEML DKAIEYVHFL QRKIQIFESK WRCNLQEQGL CLIPVSMLKL 180 V* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024528641.1 | 1e-127 | uncharacterized protein LOC9632831 | ||||
TrEMBL | D8R9T5 | 1e-128 | D8R9T5_SELML; Uncharacterized protein | ||||
STRING | EFJ31208 | 1e-129 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00120.1 | 2e-07 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 408741 |
Entrez Gene | 9632831 |
Publications ? help Back to Top | |||
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