PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

407706

Common Name

SELMODRAFT_407706

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 310aa MW: 34218.6 Da PI: 6.3187

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
407706	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	44.4	3.1e-14	130	179	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N++f L+ llPk+ +K +Ka+i+ ++++Y+ +L+ 407706 130 QRENHILAERQRREEMNEKFTALKALLPKS-----TKKDKASIVGETINYVLELE 179 79*************************9.....8*************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	16.437	129	178	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-11	130	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-16	130	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.0E-15	130	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.20E-13	130	175	No hit	No description
SMART	SM00353	3.5E-13	135	184	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	2.9E-5	238	305	No hit	No description
Gene3D	G3DSA:3.30.70.260	5.8E-5	239	305	No hit	No description
PROSITE profile	PS51671	9.224	241	309	IPR002912	ACT domain
Pfam	PF13740	2.3E-5	241	306	No hit	No description
CDD	cd04873	3.27E-4	241	302	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008152	Biological Process	metabolic process
GO:0016597	Molecular Function	amino acid binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MLPSSSFPPV YQQDEGGGFD PTKSDRYWES PATVSVVDED LRSCNQMPFK NEFQELLPVP 60 NGGSGSGIFT PGSHHQHQLL QPQLQFGGEQ DAPFGSINEA QAKQEMLAYQ ALCQAELMRS 120 EKTPHRTQFQ RENHILAERQ RREEMNEKFT ALKALLPKST KKDKASIVGE TINYVLELEK 180 KLKELQSTAN SKTSHRHKRR ALPAETNPER RIATSSNADQ GENLSVKPAD IELQSIGGQA 240 IIKMVCMRSP GLALRILATL ESCQAQVIQS NIATLGSHAI LFFTVELSSS NTSTEELIAT 300 LELAASRTE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024527294.1	0.0	transcription factor FAMA
TrEMBL	D8R6H8	0.0	D8R6H8_SELML; Uncharacterized protein
STRING	EFJ32676	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP15271	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	2e-14	bHLH family protein

Link Out ? help Back to Top
Phytozome	407706
Entrez Gene	9652472

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]