PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

406969

Common Name

SELMODRAFT_406969

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 327aa MW: 33954 Da PI: 7.5546

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
406969	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	41.5	3.4e-13	148	218	2	66
trihelix 2 WtkqevlaLiearremeerlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 Wt++ev++Li+ +r e+++ ++ k +We++s++++++g+ + ++C+ kw nl + yk++k 406969 148 WTHDEVMVLIREKRIELEQYEGTSdrermvCSKEKWERISARLQAEGYDKDLEKCRIKWTNLMTVYKAVKL 218 ***********94444444222223344889********************************9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.795	140	210	IPR017877	Myb-like domain
CDD	cd12203	1.04E-15	146	217	No hit	No description
Pfam	PF13837	3.0E-10	146	223	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MERRGVVLAS VPRQKRGFHG VEGLGVSHGV GAGSLGLGAG RTLGPNSHCV AAESFGPSAG 60 GSLGADSHGV AVGDLGPGAG GTLLPRAGAS SHCLAVGGSG SSGSGSGVGT LVPGFGATAS 120 SHGVATSVPG GGIMSFGGPS VRDRQSNWTH DEVMVLIREK RIELEQYEGT SDRERMVCSK 180 EKWERISARL QAEGYDKDLE KCRIKWTNLM TVYKAVKLYD HSTGCGNYFA LTTKERSAAK 240 LGIIEKEAFD EIDEFLSAKP NITLAKLCDS SSRPPTRSGG SGSGSRSSNF GTGIENEDRG 300 TAEEVHYPLN SWCEHSIIKL ANLMGV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002965863.2	0.0	uncharacterized protein LOC9634302 isoform X1
TrEMBL	D8R3I0	0.0	D8R3I0_SELML; Uncharacterized protein
STRING	EFJ33283	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP12351	2	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	406969
Entrez Gene	9634302

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]