PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

406693

Common Name

SELMODRAFT_406693

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 387aa MW: 43674.9 Da PI: 6.2991

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
406693	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	49.7	6.9e-16	114	165	109	163
GRAS 109 eervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetge 163 ++rvHiiD+++ +G QWp+L++aL++R+eg p ++iTg++ p+ + +le+tg+ 406693 114 AKRVHIIDYGVLYGDQWPSLIKALSERAEGLPLFKITGINFPS---RVNLEKTGW 165 589*************************************976...556666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	2.4E-13	114	165	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MDSNPCLQLR AALVRYQILL ESVQAQISSQ EQQSLFDCSR LDYLTRILEE KDGLEPQVAT 60 TTANLLPVEK AVRVWSSDVR CDAPGRDEDA EYLHPDESSQ PPGHGALHQP DDPAKRVHII 120 DYGVLYGDQW PSLIKALSER AEGLPLFKIT GINFPSRVNL EKTGWSTTCG MHLELHSVAT 180 VAWESAQPRY HPLDAARLRG RDHRQPRKLF FEKTLSFKPV MLFQSVVDAD MGSPFFIHRF 240 DRAWRSFLAR LESFEETMKL GLIDQSQLDF MDKFIEVCAI GAMDITVWSA SPRAKPGTAA 300 LEMVMSVLRE LDLLNGRERC ATHFLVNLLR HCHPFEACSL HPSIPDAIRV HSIQPFTRDD 360 GHDVSCCHLL DIPASGFVSF CIKWIK*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MDSNPCLQLR AALVRYQILL ESVQAQISSQ EQQSLFDCSR LDYLTRILEE KDGLEPQVAT  60
TTANLLPVEK AVRVWSSDVR CDAPGRDEDA EYLHPDESSQ PPGHGALHQP DDPAKRVHII  120
DYGVLYGDQW PSLIKALSER AEGLPLFKIT GINFPSRVNL EKTGWSTTCG MHLELHSVAT  180
VAWESAQPRY HPLDAARLRG RDHRQPRKLF FEKTLSFKPV MLFQSVVDAD MGSPFFIHRF  240
DRAWRSFLAR LESFEETMKL GLIDQSQLDF MDKFIEVCAI GAMDITVWSA SPRAKPGTAA  300
LEMVMSVLRE LDLLNGRERC ATHFLVNLLR HCHPFEACSL HPSIPDAIRV HSIQPFTRDD  360
GHDVSCCHLL DIPASGFVSF CIKWIK*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024543121.1	1e-158	scarecrow-like protein 34
TrEMBL	D8R156	0.0	D8R156_SELML; Uncharacterized protein
STRING	EFJ34206	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G29065.1	3e-13	GRAS family protein

Link Out ? help Back to Top
Phytozome	406693
Entrez Gene	9659416

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]