PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

405704

Common Name

SELMODRAFT_405704

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

G2-like

Protein Properties

Length: 355aa MW: 38883.3 Da PI: 8.8312

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
405704	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.9	8.3e-32	220	273	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +r+rWt++LH++Fv+ave+LGG+e+AtPkt+lelm+vk Ltl+hvkSHLQ+YR+ 405704 220 QRMRWTSNLHAHFVKAVERLGGHERATPKTVLELMNVKELTLAHVKSHLQMYRT 273 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.04E-14	218	273	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.5E-28	218	273	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.8E-24	220	273	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-6	221	272	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MEMPIRLLAP AEPDLSLRIS TPPAIRGGGS HHDGTSAFEI WKKSGGSSSS SDCSSSNYSP 60 RGEHHHLEAV EASTELSLGR SFLYRAHSGE IDHHHHHASM HAARSDRNSS IDGLFRIGMR 120 SSSPDGDHYP RQGIDFLSRA PAYGLRFAPV TEITQEHHDP APAVGNSNSH SGHCQEQQKK 180 IEKMGGSENS LRESIVVSAP SQQRSRIISK LPVKRSARAQ RMRWTSNLHA HFVKAVERLG 240 GHERATPKTV LELMNVKELT LAHVKSHLQM YRTVKTTDKA TLTEKNMEEM AEEAQSPNSS 300 SSGRDDWSNT RCNTNVRLVG QLEAGELGKH DELSSLGNLV PKRAAVAAVQ WLGS*

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MEMPIRLLAP AEPDLSLRIS TPPAIRGGGS HHDGTSAFEI WKKSGGSSSS SDCSSSNYSP  60
RGEHHHLEAV EASTELSLGR SFLYRAHSGE IDHHHHHASM HAARSDRNSS IDGLFRIGMR  120
SSSPDGDHYP RQGIDFLSRA PAYGLRFAPV TEITQEHHDP APAVGNSNSH SGHCQEQQKK  180
IEKMGGSENS LRESIVVSAP SQQRSRIISK LPVKRSARAQ RMRWTSNLHA HFVKAVERLG  240
GHERATPKTV LELMNVKELT LAHVKSHLQM YRTVKTTDKA TLTEKNMEEM AEEAQSPNSS  300
SSGRDDWSNT RCNTNVRLVG QLEAGELGKH DELSSLGNLV PKRAAVAAVQ WLGS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	221	275	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	221	275	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	221	275	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	221	275	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002964461.1	0.0	probable transcription factor KAN2 isoform X1
TrEMBL	D8QZF8	0.0	D8QZF8_SELML; Uncharacterized protein
STRING	EFJ34794	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP570	15	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42630.2	8e-37	G2-like family protein

Link Out ? help Back to Top
Phytozome	405704
Entrez Gene	9655654

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]