PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 405683 | ||||||||
Common Name | SELMODRAFT_405683 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | G2-like | ||||||||
Protein Properties | Length: 570aa MW: 63894.2 Da PI: 6.4085 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 21 | 7.3e-07 | 6 | 24 | 37 | 55 |
G2-like 37 kvkgLtlehvkSHLQkYRl 55 +v+g+ + hvkSHLQkYRl 405683 6 SVDGVNILHVKSHLQKYRL 24 699***************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-5 | 6 | 25 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 3.1E-19 | 56 | 101 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
SuperFamily | SSF52402 | 2.56E-41 | 224 | 420 | No hit | No description |
Gene3D | G3DSA:3.40.50.620 | 9.0E-58 | 225 | 375 | IPR014729 | Rossmann-like alpha/beta/alpha sandwich fold |
CDD | cd01999 | 4.88E-162 | 226 | 559 | No hit | No description |
Pfam | PF00764 | 5.7E-79 | 227 | 435 | IPR001518 | Argininosuccinate synthase |
PROSITE pattern | PS00564 | 0 | 229 | 237 | IPR018223 | Argininosuccinate synthase, conserved site |
PROSITE pattern | PS00565 | 0 | 332 | 343 | IPR018223 | Argininosuccinate synthase, conserved site |
Gene3D | G3DSA:3.90.1260.10 | 5.4E-26 | 376 | 434 | IPR024074 | Argininosuccinate synthetase, catalytic/multimerisation domain body |
SuperFamily | SSF69864 | 3.53E-46 | 387 | 568 | No hit | No description |
Pfam | PF00764 | 3.2E-26 | 457 | 562 | IPR001518 | Argininosuccinate synthase |
Gene3D | G3DSA:3.90.1260.10 | 1.9E-30 | 458 | 565 | IPR024074 | Argininosuccinate synthetase, catalytic/multimerisation domain body |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006526 | Biological Process | arginine biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0004055 | Molecular Function | argininosuccinate synthase activity | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 570 aa Download sequence Send to blast |
MNTYSSVDGV NILHVKSHLQ KYRLVKDLPP SPVAKQQQSK QCSLELPSLN VETGLQITET 60 LRLQLEVQKQ LHEQLEIQRD LQKKIEDHGR YLERMYSKTE EATRSCHKNS DEPSPGPQEQ 120 EQRKHHQTCD DQIHQASGTT TSTADSFQPP LKKLKPSQEQ EELQPVGDED VDFSELWKVY 180 GMAALAPSSG SIAVAPRSRA AHFAQQSPAS RRILALSDQW QKLNKVVLAY SGGLDTSVIV 240 PWLRENYGCV CFTADVGQGL GELEWLEAKA KASGASQLII KDLKEEFVKD FIFPCLRAGA 300 VYERKYLLGT SMARPAMVDA AKEVGADAVS HGCTGKGNDQ VRFELTFFAL NPKLAVVAPW 360 REWDIKGRED AIEYAKKHNV PVPVTKKSIY SRDRNLWHIR HEGDILEDPA NEPKEDMFVM 420 TTNPEKAPDT PENLFVPEPR SVRDARWNHP EPSSAGAESL ALDRETMQMK DTMALKYAEL 480 VYAGRWFDPL RESLDAFMEK VTETTSGSVK QKLFKGSAVV ASRTSPFSLY RQDISSFEEG 540 SGIYNQGDAA GFIRLYGLPT RVRAMLLEK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1j21_A | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1j21_B | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1j21_C | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1j21_D | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kh1_A | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kh1_B | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kh1_C | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kh1_D | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kh2_A | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kh2_B | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kh2_C | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kh2_D | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kh3_A | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kh3_B | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kh3_C | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kh3_D | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kor_A | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kor_B | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kor_C | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
1kor_D | 1e-108 | 225 | 566 | 2 | 393 | Argininosuccinate Synthetase |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024524562.1 | 0.0 | LOW QUALITY PROTEIN: argininosuccinate synthase, chloroplastic | ||||
Swissprot | Q9SZX3 | 0.0 | ASSY_ARATH; Argininosuccinate synthase, chloroplastic | ||||
TrEMBL | D8QZD4 | 0.0 | D8QZD4_SELML; Uncharacterized protein | ||||
STRING | EFJ34388 | 0.0 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 5e-24 | phosphate starvation response 1 |
Link Out ? help Back to Top | |
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Phytozome | 405683 |
Entrez Gene | 9654530 |