PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 405518 | ||||||||
Common Name | SELMODRAFT_405518 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | C3H | ||||||||
Protein Properties | Length: 280aa MW: 32290.5 Da PI: 9.8593 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20 | 1.2e-06 | 8 | 32 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC+ f+r G C++ +C+FaHg+ 405518 8 YKTKLCNLFQR-GNCHR-QTCSFAHGE 32 9**********.*****.*******96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-12 | 5 | 38 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.06E-5 | 6 | 37 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.868 | 7 | 33 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.2E-4 | 8 | 32 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 280 aa Download sequence Send to blast |
MPDNRELYKT KLCNLFQRGN CHRQTCSFAH GEEELRRVPG RSGYYSRRSE DRFYNRRTYD 60 RRGSYDRGGS RSRSPTRQRT SRSLSSPRST GQKRSGSNLF RDRDRDGDGK RIKGDRVSEL 120 SEVRALGDGQ SDGKEVQSSS LNEQLHEVGT DLDALDKQKS QLENALLENS RMASRNSEAE 180 SKIGNLTFQV KSFERLRKSI VRVFRLREEL KMAESRLDKE ASELARSEDI RMFDPPYDGD 240 YSNHSRWNRS NGDIPPPPPP PDKYRMNDIA PEPPHYDNH* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024524680.1 | 0.0 | zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | D8QYU5 | 0.0 | D8QYU5_SELML; Uncharacterized protein | ||||
STRING | EFJ34301 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5164 | 12 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 3e-09 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | 405518 |
Entrez Gene | 9654278 |
Publications ? help Back to Top | |||
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