PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

405492

Common Name

SELMODRAFT_405492

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 453aa MW: 49385 Da PI: 4.8207

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
405492	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.7	2.6e-05	281	315	17	55
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 s++e L+ l+P++ s+ l+ ++Le A++Y+ksL+ 405492 281 DSRLELLQHLIPHS----SRQLDEEQVLEVAIDYVKSLE 315 6899*******9....899**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.88E-7	280	329	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.1E-7	283	331	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MARDPAYDLA RGFTSPCDWA ASFAKNESQA LAGFGVARKF QSSRLQQQPL PLRSIFTDST 60 VPTLARLANS PATRDDGANE ICARNGAPSS ANPQDPIDEL DLGQRPEATS ESGWTAYLDI 120 SVDWNAYNSL SRHLIRPGSI DDGGSMEDEW REDSSMESDA SSGPEQPELL RKEGLRRNAL 180 RGKRKSAAVR ETNPCCVVRE GENDLDDTCQ SNLSCESVSD DPRPARRRCK RSRVGDDHQP 240 ALSRPPQVVD EHSDENEVEV EAGEAEISSP PSVNIHEKAV DSRLELLQHL IPHSSRQLDE 300 EQVLEVAIDY VKSLEEEIKM FGASKDGLSS EQSASAGDSA MTSQTCQAAS ALQDKGICMF 360 PLSMFAGARS MDTTHNTQIL FDLKLNLYLV STVKKRKELL ALYLWLPAIH PGSHACISIN 420 NIPNKVGMMK QYLLEGREAG GAGQGRGAMK GI*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MARDPAYDLA RGFTSPCDWA ASFAKNESQA LAGFGVARKF QSSRLQQQPL PLRSIFTDST  60
VPTLARLANS PATRDDGANE ICARNGAPSS ANPQDPIDEL DLGQRPEATS ESGWTAYLDI  120
SVDWNAYNSL SRHLIRPGSI DDGGSMEDEW REDSSMESDA SSGPEQPELL RKEGLRRNAL  180
RGKRKSAAVR ETNPCCVVRE GENDLDDTCQ SNLSCESVSD DPRPARRRCK RSRVGDDHQP  240
ALSRPPQVVD EHSDENEVEV EAGEAEISSP PSVNIHEKAV DSRLELLQHL IPHSSRQLDE  300
EQVLEVAIDY VKSLEEEIKM FGASKDGLSS EQSASAGDSA MTSQTCQAAS ALQDKGICMF  360
PLSMFAGARS MDTTHNTQIL FDLKLNLYLV STVKKRKELL ALYLWLPAIH PGSHACISIN  420
NIPNKVGMMK QYLLEGREAG GAGQGRGAMK GI*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024524660.1	0.0	uncharacterized protein LOC9655543
TrEMBL	D8QYR5	0.0	D8QYR5_SELML; Uncharacterized protein
STRING	EFJ34663	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	1e-06	LJRHL1-like 2

Link Out ? help Back to Top
Phytozome	405492
Entrez Gene	9655543

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]