PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

405399

Common Name

SELMODRAFT_405399

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

G2-like

Protein Properties

Length: 344aa MW: 36773.1 Da PI: 9.5694

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
405399	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107	1e-33	69	123	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWtp+LHerFveav qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl 405399 69 KQRLRWTPDLHERFVEAVGQLGGADRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 123 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.242	66	126	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-32	67	124	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.4E-17	68	123	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-25	69	124	IPR006447	Myb domain, plants
Pfam	PF00249	8.0E-9	71	122	IPR001005	SANT/Myb domain
Pfam	PF14379	3.8E-24	151	198	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MLYEALKQST TKMSQHQRPS LPSPSPHHHQ ALSDPQRIAS GSSPGATSSG GGGGASSNAV 60 SNAAAAAAKQ RLRWTPDLHE RFVEAVGQLG GADRATPKGV LRVMGVQGLT IYHVKSHLQK 120 YRLAKYIPDP MGDGKSDKRR HPDLPSLGGS VQINEALRMQ MEVQKRLQEQ LEVQRHLQLR 180 IEAQGKYLQK IIDEQKKMSG GLDNQPGASP GSTQVFSSDI TVQGSDLKYE LTESVPGLMD 240 PPGGGGGGAL PAITSALSAL GSMAANNSLS RENSPASVPN PLGASYTLLN NNNNNIRTDD 300 AVVVSPRHQE SVEEYLHSKS LQQQQQSYHH SSYLQCNTAG RLP*

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MLYEALKQST TKMSQHQRPS LPSPSPHHHQ ALSDPQRIAS GSSPGATSSG GGGGASSNAV  60
SNAAAAAAKQ RLRWTPDLHE RFVEAVGQLG GADRATPKGV LRVMGVQGLT IYHVKSHLQK  120
YRLAKYIPDP MGDGKSDKRR HPDLPSLGGS VQINEALRMQ MEVQKRLQEQ LEVQRHLQLR  180
IEAQGKYLQK IIDEQKKMSG GLDNQPGASP GSTQVFSSDI TVQGSDLKYE LTESVPGLMD  240
PPGGGGGGAL PAITSALSAL GSMAANNSLS RENSPASVPN PLGASYTLLN NNNNNIRTDD  300
AVVVSPRHQE SVEEYLHSKS LQQQQQSYHH SSYLQCNTAG RLP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-25	69	126	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-25	69	126	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-25	69	126	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-25	69	126	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002988201.2	0.0	uncharacterized protein LOC9636347
TrEMBL	D8QX79	0.0	D8QX79_SELML; Uncharacterized protein
STRING	EFJ35363	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP78	17	262

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	7e-64	G2-like family protein

Link Out ? help Back to Top
Phytozome	405399
Entrez Gene	9643702

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]