PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

405220

Common Name

SELMODRAFT_405220

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 460aa MW: 48353.6 Da PI: 5.7915

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
405220	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.6	1.1e-08	298	339	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r RR+ri +++ L++l+P +K++ a++L +A++Y+k+L+ 405220 298 ARHRRERISTKIRILQRLVPGG-----TKMDTASMLDEAIHYVKYLK 339 599***************87.....8***************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.367	289	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.09E-13	295	350	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.25E-10	295	343	No hit	No description
SMART	SM00353	6.1E-13	295	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.7E-12	297	348	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-6	299	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 460 aa Download sequence Send to blast
MDSSSSEQLA GFGIVGHQFG SGASSYVLDM DRVEPPFLCA GEEHATDSSS QSSPAGAGIS 60 IDFGGGMEST EELHYLIHGG DRSVFDQLDI FGQHNFPPLL DPAAALGCGD AHHGQLPDLD 120 ELIQASGVDA VGSSSSDGEG VDHQHQHQHQ QHEAVHASAS SATSSASSDA GLCPLGTSSS 180 GATSVMQQAQ AIQPGEPWAH RFPDVGFTSG MAADPESKQG MFSASQGGSD MEHASSQAPN 240 EQHQGGGGAG AGAGMANMRE TLYRMAVWRP ITATDCLGGS KPKRRNVRIS SDPQTVAARH 300 RRERISTKIR ILQRLVPGGT KMDTASMLDE AIHYVKYLKS QVQAMEMLEQ SSGDQPLLRN 360 SSSAASLAST ATAASQTAAP GICHLYNAHS GSGLLNGSIF WPQQFSMDSG GLLVQQILMK 420 HLHRAGLPPP LSCGKDQAAR ERRIDDHMIL CFALSQMEM*

Sequence ? help Back to Top

Protein Sequence Length: 460 aa Download sequence Send to blast

MDSSSSEQLA GFGIVGHQFG SGASSYVLDM DRVEPPFLCA GEEHATDSSS QSSPAGAGIS  60
IDFGGGMEST EELHYLIHGG DRSVFDQLDI FGQHNFPPLL DPAAALGCGD AHHGQLPDLD  120
ELIQASGVDA VGSSSSDGEG VDHQHQHQHQ QHEAVHASAS SATSSASSDA GLCPLGTSSS  180
GATSVMQQAQ AIQPGEPWAH RFPDVGFTSG MAADPESKQG MFSASQGGSD MEHASSQAPN  240
EQHQGGGGAG AGAGMANMRE TLYRMAVWRP ITATDCLGGS KPKRRNVRIS SDPQTVAARH  300
RRERISTKIR ILQRLVPGGT KMDTASMLDE AIHYVKYLKS QVQAMEMLEQ SSGDQPLLRN  360
SSSAASLAST ATAASQTAAP GICHLYNAHS GSGLLNGSIF WPQQFSMDSG GLLVQQILMK  420
HLHRAGLPPP LSCGKDQAAR ERRIDDHMIL CFALSQMEM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024524106.1	0.0	putative transcription factor bHLH086
TrEMBL	D8QWN0	0.0	D8QWN0_SELML; Uncharacterized protein
STRING	EFJ35265	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP761	15	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-33	bHLH family protein

Link Out ? help Back to Top
Phytozome	405220
Entrez Gene	9643604

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]