PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 405209
Common NameHANa-1, SELMODRAFT_405209
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GATA
Protein Properties Length: 486aa    MW: 50990.8 Da    PI: 8.7115
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
405209genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA61.97.6e-20260294135
    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
             C++Cgt++TplWR+gp g+k+LCnaCG++++k g+
  405209 260 CAHCGTSSTPLWRNGPLGPKSLCNACGIRFKKVGR 294
             ********************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.18E-15253300No hitNo description
PROSITE profilePS5011414.14254299IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-17254305IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.4E-17258298IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.99E-15259299No hitNo description
PROSITE patternPS003440260285IPR000679Zinc finger, GATA-type
PfamPF003201.3E-17260294IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MEAASSPSTC LSLSSDFLSP ANSVVSSSWP NSCNSSPKRG FAAANSSSCP SSPTKRFHLH  60
WDLADPAAAA TATAAAAASL PSLAVDCTLS LGNALTRSRS ADLNEAPNRL SRAGSPISEP  120
AKTIDPPKLA SPPSYQQSGT HWATSNELFL QQQRAFSAEA AARRIAAAAA AARFAAHSTS  180
KDFYARHPVL HSQFPAANFS PSQELHKFGF LEFNTGGSGG GGGNGNGGLG SKNNLDPCST  240
RSRFRGVDAH VDPRNVPRIC AHCGTSSTPL WRNGPLGPKS LCNACGIRFK KVGRRSPVTV  300
TPVTAAAWNQ SGSSCDDLGG FAKSRSDTNL GEQQQQPVIA AIPPKTSLVH PAQAYHVDDK  360
RLCRMDQNAA TIAANASAIA LPFAKEWSSN DQSPCSSNAV GSSCITWQDS MPPAVCVDQP  420
GSEDCSKAKV FARPDPHHHH HHQHHSPLVL DAEIIRSVAP VKAVSTVSGH GQSKEEQGRF  480
LRMSL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00110ampDAPTransfer from AT2G18380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002974877.20.0uncharacterized protein LOC9637672
TrEMBLD8QWL60.0D8QWL6_SELML; Uncharacterized protein HANa-1
STRINGEFJ356590.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.12e-16GATA transcription factor 20
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]