PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 404737 | ||||||||
Common Name | SELMODRAFT_404737 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | AP2 | ||||||||
Protein Properties | Length: 450aa MW: 49538.3 Da PI: 10.8778 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.5 | 1.2e-11 | 327 | 388 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.......krkrfslgkfgtaeeAakaaiaarkklege 56 s y GV+++k+ rW+A+I+++++ + k+k++++g+ t+e Aa+ +++a k++ge 404737 327 SSYVGVSFYKRVERWEAHICEFVN-NltiravdKNKQIYIGSSSTPEAAARIYDRAYIKFRGE 388 679***************999544.3355569888*************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 3.33E-8 | 327 | 395 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.32E-11 | 327 | 396 | No hit | No description |
Pfam | PF00847 | 2.3E-5 | 327 | 388 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-7 | 328 | 394 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-7 | 328 | 400 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 11.838 | 328 | 409 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MEAVGSSAVD GKFPCFLRVF GKFQTFVTFR SPNHGKIMPR VNPFRSVTVA AETAAPLQTQ 60 PSRRSSPTGV LLSPCSSMEL LAVQVLAMGF RCQDTTVKGT RCRRSTSRKA RSSPWPSHHL 120 LSARAQKVLE VPPVDPRLLA AMDGAEHDPV LAPPAAPSRA HAAAFILPPV APAVVRAPRT 180 KRRRLAPLSS AMATVESQSS PSSSLAAESE NKEDGSEEPA SFWSSTDGNG ERAADDHRVI 240 KEEKKPFSMA TWATPGMRTT SSSSRRKRSS SSSATERTTT IKPSSQSSSS KCSKKKTAVA 300 PKGLEEEASK RKRTPPKSAR RYTAKSSSYV GVSFYKRVER WEAHICEFVN NLTIRAVDKN 360 KQIYIGSSST PEAAARIYDR AYIKFRGENC PNFPYSDYVH EMPQWINLPG QDFIKMLRNM 420 SRGDSLLWLT PEHLVRTRTA SKRSSKYKN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 184 | KRRRL |
2 | 293 | 312 | KKKTAVAPKGLEEEASKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D8QW85 | 0.0 | D8QW85_SELML; Uncharacterized protein | ||||
STRING | EFJ36190 | 0.0 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G39250.1 | 1e-14 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 404737 |
Entrez Gene | 9661623 |
Publications ? help Back to Top | |||
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