PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 404134
Common NameSELMODRAFT_404134, WOX3-1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family WOX
Protein Properties Length: 313aa    MW: 35422.7 Da    PI: 8.6134
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
404134genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.65.9e-15129184357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC.TS-HHHHHHHHHHHHHHHHC CS
  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl.gLterqVkvWFqNrRakekk 57 
               +R+ ++++ql++Lee+++k   ps e ++ +A+ + +++ ++V++WF N++ +ek+
    404134 129 QRWEPNSYQLQILEEFYAKATPPSPENIANIAELVgQVDHSKVYYWFSNKKSREKR 184
               7**********************************99******************7 PP

2Wus_type_Homeobox53.36.8e-18128186365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW P++ Q++iLee y +++  P+ e+i +i++     G+++   V+yWF N+k+Re++k+
             404134 128 QQRWEPNSYQLQILEEFYAKAT-PPSPENIANIAEL---VGQVDHSKVYYWFSNKKSREKRKR 186
                        79****************9875.699999**99865...5*********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.0084121189IPR001356Homeobox domain
PROSITE profilePS5007110.77124185IPR001356Homeobox domain
SuperFamilySSF466898.98E-11128188IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.1E-10128189IPR009057Homeodomain-like
PfamPF000467.5E-13129184IPR001356Homeobox domain
CDDcd000860.00163130177No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDSLPTASCS TPSVGRRSYG RRWIANEVTW LELNCHLLKG RSEVFICGVF TGSPQRSFSL  60
LFSPPASLDR MPRRKQQASR ASSVSDQIDQ ERREMRLEIK ALHVHHRSQR NNTNISSEPA  120
PPRPVGVQQR WEPNSYQLQI LEEFYAKATP PSPENIANIA ELVGQVDHSK VYYWFSNKKS  180
REKRKRRRLE EAAASASSSP AFSAIATTAA ASSGSEQSHH QSYADQIVND GSFLPDACLF  240
ETNVTLEQPR IIPSHEEESP LQLSLGWSFA NLDEHWEFSV LIDRTLRLSP LGKWKLDDYR  300
NVILSSTFWP KI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181188EKRKRRRL
2182187KRKRRR
3183187RKRRR
4184188KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD8QUD70.0D8QUD7_SELML; Uncharacterized protein WOX3-1
STRINGEFJ358520.0(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-07WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]