PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 404134 | ||||||||
Common Name | SELMODRAFT_404134, WOX3-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | WOX | ||||||||
Protein Properties | Length: 313aa MW: 35422.7 Da PI: 8.6134 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 46.6 | 5.9e-15 | 129 | 184 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC.TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl.gLterqVkvWFqNrRakekk 57 +R+ ++++ql++Lee+++k ps e ++ +A+ + +++ ++V++WF N++ +ek+ 404134 129 QRWEPNSYQLQILEEFYAKATPPSPENIANIAELVgQVDHSKVYYWFSNKKSREKR 184 7**********************************99******************7 PP | |||||||
2 | Wus_type_Homeobox | 53.3 | 6.8e-18 | 128 | 186 | 3 | 65 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++RW P++ Q++iLee y +++ P+ e+i +i++ G+++ V+yWF N+k+Re++k+ 404134 128 QQRWEPNSYQLQILEEFYAKAT-PPSPENIANIAEL---VGQVDHSKVYYWFSNKKSREKRKR 186 79****************9875.699999**99865...5*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 0.0084 | 121 | 189 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 10.77 | 124 | 185 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-11 | 128 | 188 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-10 | 128 | 189 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 7.5E-13 | 129 | 184 | IPR001356 | Homeobox domain |
CDD | cd00086 | 0.00163 | 130 | 177 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MDSLPTASCS TPSVGRRSYG RRWIANEVTW LELNCHLLKG RSEVFICGVF TGSPQRSFSL 60 LFSPPASLDR MPRRKQQASR ASSVSDQIDQ ERREMRLEIK ALHVHHRSQR NNTNISSEPA 120 PPRPVGVQQR WEPNSYQLQI LEEFYAKATP PSPENIANIA ELVGQVDHSK VYYWFSNKKS 180 REKRKRRRLE EAAASASSSP AFSAIATTAA ASSGSEQSHH QSYADQIVND GSFLPDACLF 240 ETNVTLEQPR IIPSHEEESP LQLSLGWSFA NLDEHWEFSV LIDRTLRLSP LGKWKLDDYR 300 NVILSSTFWP KI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 181 | 188 | EKRKRRRL |
2 | 182 | 187 | KRKRRR |
3 | 183 | 187 | RKRRR |
4 | 184 | 188 | KRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | D8QUD7 | 0.0 | D8QUD7_SELML; Uncharacterized protein WOX3-1 | ||||
STRING | EFJ35852 | 0.0 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18010.1 | 3e-07 | WUSCHEL related homeobox 1 |
Link Out ? help Back to Top | |
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Phytozome | 404134 |
Entrez Gene | 9660752 |
Publications ? help Back to Top | |||
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