PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

403539

Common Name

SELMODRAFT_403539

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 488aa MW: 54631.2 Da PI: 6.3732

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
403539	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	35.3	3e-11	131	240	2	87
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.......................rergferspkqCkekwenlnkrykkikegekkr.tsessst 78 W+ + + +L+++ re+ +++ ++ ++ Wee ++ + +++ + +++kqC k++nl+++yk +ke+ + + s s 403539 131 WSTHATSVLLDVFREKRLAINGRNFRGEEWEELASSVnercyaitppnssnlttiatasnSSKELWKNAKQCSYKMSNLKRKYKSEKEMIQLTgSHSSGSG 231 ***************************************************************************************999866777789 PP trihelix 79 cpyfdqlea 87 +++f+++ea 403539 232 WQWFSKMEA 240 *****85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	8.1E-11	130	241	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence Send to blast
MEAFVEDDDP MDYFQQHDHH HHQQQQPDHP KNELRVHISS STTPQQDPPP PSFSLMKNGE 60 VDVDDDEDDQ EQQEKQQPRS LSDQNLSQQQ QQQQRQHDHH AEQQLEQLNK SSDAIADQAD 120 SKEGSKDAGS WSTHATSVLL DVFREKRLAI NGRNFRGEEW EELASSVNER CYAITPPNSS 180 NLTTIATASN SSKELWKNAK QCSYKMSNLK RKYKSEKEMI QLTGSHSSGS GWQWFSKMEA 240 IFGSDPKYTT FSSGISSGSE LALHASKGDL IVDAVAGATD EEIFGANNKV VVINSTDKRI 300 LRNNSFDPGV LLPPSKSAST NNLDGSSPST DPRRETAAES SPREFYTTTS KHSHSKKKLC 360 VINSGQIPAA GVGGSPAAAA AAGGSMEGSF PASFSDSIKL LLMQQKEAIN LLRELSYNRP 420 PSSQQRHARA FFFWIFGRTF SYEKELKDAM QVYEDKNKYR NELVRKLMEG VYEKEISKMR 480 RRQHDLP*

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence Send to blast

MEAFVEDDDP MDYFQQHDHH HHQQQQPDHP KNELRVHISS STTPQQDPPP PSFSLMKNGE  60
VDVDDDEDDQ EQQEKQQPRS LSDQNLSQQQ QQQQRQHDHH AEQQLEQLNK SSDAIADQAD  120
SKEGSKDAGS WSTHATSVLL DVFREKRLAI NGRNFRGEEW EELASSVNER CYAITPPNSS  180
NLTTIATASN SSKELWKNAK QCSYKMSNLK RKYKSEKEMI QLTGSHSSGS GWQWFSKMEA  240
IFGSDPKYTT FSSGISSGSE LALHASKGDL IVDAVAGATD EEIFGANNKV VVINSTDKRI  300
LRNNSFDPGV LLPPSKSAST NNLDGSSPST DPRRETAAES SPREFYTTTS KHSHSKKKLC  360
VINSGQIPAA GVGGSPAAAA AAGGSMEGSF PASFSDSIKL LLMQQKEAIN LLRELSYNRP  420
PSSQQRHARA FFFWIFGRTF SYEKELKDAM QVYEDKNKYR NELVRKLMEG VYEKEISKMR  480
RRQHDLP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024542755.1	0.0	uncharacterized protein LOC9657866 isoform X2
TrEMBL	D8QRR1	0.0	D8QRR1_SELML; Uncharacterized protein
STRING	EFJ37297	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	4e-17	Trihelix family protein

Link Out ? help Back to Top
Phytozome	403539
Entrez Gene	9657866

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]