PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

403406

Common Name

SELMODRAFT_403406

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 573aa MW: 60320.9 Da PI: 6.3218

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
403406	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.9	1.6e-07	391	434	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ r+RR++i ++ eL +l+P + Kl+ a++L +A++++k Lq 403406 391 IAARQRRKKISERVRELEKLVPGgN------KLDTASMLDEAIRFVKFLQ 434 567*****************955......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.07E-10	383	438	No hit	No description
PROSITE profile	PS50888	14.494	384	433	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.1E-12	387	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-10	389	442	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-10	390	439	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.1E-5	392	434	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 573 aa Download sequence Send to blast
MDPFQGDVFG EFAHDDESLN QLVSSGSFCC AFSQDHHQHH HQCPSFSLDA ASSTCDHLLS 60 PSDTDSFGIP AKNHSPGSAS ENLSIISSSC GGASCFLEFG GAGAGAGSTD SSPASSIVEQ 120 AAAYTTAAGF DHPPPPPPPP VDLHGAASLL ESWHFLQYES LPGLLHIPEP VDHFSKLSGS 180 SSSPPSFDLL PGGTASSHDD VIILGSLLDH HHPHSRAHEV MIQQQENAPR AGDDRHVPEQ 240 ELVPGARHAP CSDDDHTDID MIDRRELCSS KEQPKLMEVE ASPPMAASHQ SNKRQRGCFT 300 LQNVSESLQH HSVIFHNVGV AAKLSEAMLL QINSSVARNP SPVSPVAASA RNPSSTITSS 360 SATTTTSTGS GGGGHGSFSY RFKETVEPQS IAARQRRKKI SERVRELEKL VPGGNKLDTA 420 SMLDEAIRFV KFLQIQVQLL EAVGNGGHGN YGANNHCLNV PLNHQARMFP FSSSPSSSIA 480 ISSPCSSSSS SSSSSCASSS CNLASMAIAT SSVVAMSPAS IADSVLLLGS RRSSSASSSS 540 PLVLTETLQH ALFKHKRCVA TIQQCPVEHL LL*

Sequence ? help Back to Top

Protein Sequence Length: 573 aa Download sequence Send to blast

MDPFQGDVFG EFAHDDESLN QLVSSGSFCC AFSQDHHQHH HQCPSFSLDA ASSTCDHLLS  60
PSDTDSFGIP AKNHSPGSAS ENLSIISSSC GGASCFLEFG GAGAGAGSTD SSPASSIVEQ  120
AAAYTTAAGF DHPPPPPPPP VDLHGAASLL ESWHFLQYES LPGLLHIPEP VDHFSKLSGS  180
SSSPPSFDLL PGGTASSHDD VIILGSLLDH HHPHSRAHEV MIQQQENAPR AGDDRHVPEQ  240
ELVPGARHAP CSDDDHTDID MIDRRELCSS KEQPKLMEVE ASPPMAASHQ SNKRQRGCFT  300
LQNVSESLQH HSVIFHNVGV AAKLSEAMLL QINSSVARNP SPVSPVAASA RNPSSTITSS  360
SATTTTSTGS GGGGHGSFSY RFKETVEPQS IAARQRRKKI SERVRELEKL VPGGNKLDTA  420
SMLDEAIRFV KFLQIQVQLL EAVGNGGHGN YGANNHCLNV PLNHQARMFP FSSSPSSSIA  480
ISSPCSSSSS SSSSSCASSS CNLASMAIAT SSVVAMSPAS IADSVLLLGS RRSSSASSSS  540
PLVLTETLQH ALFKHKRCVA TIQQCPVEHL LL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8QRB1	0.0	D8QRB1_SELML; Uncharacterized protein
STRING	EFJ37216	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5969	12	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00120.1	1e-18	bHLH family protein

Link Out ? help Back to Top
Phytozome	403406
Entrez Gene	9657234

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]