PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 402928
Common NameSELMODRAFT_402928
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 530aa    MW: 58911.8 Da    PI: 6.5892
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
402928genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-13317362454
             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
             +h + Er+RR+ +N+++++Lr+l+P++      K + a+i+  A+eY+k+L
  402928 317 NHFATERQRREYLNEKYQTLRSLVPNP-----SKADRASIVADAIEYVKEL 362
             79************************9.....7****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.53E-16313379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.529313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10317362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14317376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.16E-11317367No hitNo description
SMARTSM003533.8E-12319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MYDVPLVCVR RFNFVREVFI PANQEPRRRI IMQHFGATTL YEDHNYFARS SESFTLEGGL  60
DSDNGTGLLD LTDTLEKQLE ASNLALGEIH SDAPQLSSEL HVPSVEFELD DNGQLLHDML  120
QQQQPANSQQ QTTANTTTAA SSTATATTWE ENVHVLQEML MQQQHIQVQQ QNFFGNSTPP  180
KFRRESELLS LLQLPRCASS SLPGGTISGP FNSVSSKKLS HQGALSSFTT AAEIGDSSHV  240
HGQQLLPQPS FRHLLHTLPH ASDHHLSSKS GIMRPPGLLD LEDRDTSGGH EEGRLFPSLF  300
EKRDFTFGKG AENRGINHFA TERQRREYLN EKYQTLRSLV PNPSKADRAS IVADAIEYVK  360
ELKRTVQELQ LLVEEKRRGS NKRRCKASPD NPSEGGGVTD MESSSAIQPG GTRVSKETTF  420
LGDGSQLRSS WLQRTSQMGT QIDVRIVDDE VNIKLTQRRR RNYVLLAVLR SLNELHLDLL  480
HANGASIGEH HIFMFNTKIM EGTSTFAGQV ATKLIDAVDR HITLASSGL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024530159.10.0transcription factor EAT1
TrEMBLD8QNH70.0D8QNH7_SELML; Uncharacterized protein
STRINGEFJ387640.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP26591431
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.14e-47bHLH family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]