PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 402810 | ||||||||
Common Name | SELMODRAFT_402810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 424aa MW: 45147.6 Da PI: 6.5036 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.8 | 2.7e-18 | 31 | 81 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +gr++AeIrdp+ + r +lg+f+tae+Aa a+++a+++++g+ 402810 31 RYRGVRRRP-WGRYAAEIRDPR----SkERRWLGTFDTAEDAAIAYDNAARAMRGA 81 69*******.**********84....25999**********************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 7.9E-11 | 31 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.59E-22 | 31 | 88 | No hit | No description |
PROSITE profile | PS51032 | 22.431 | 31 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.2E-36 | 31 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.16E-21 | 31 | 90 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-30 | 31 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-9 | 32 | 43 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-9 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MKRARCDGSD GAAAAVVAKP SPLAPPAGEG RYRGVRRRPW GRYAAEIRDP RSKERRWLGT 60 FDTAEDAAIA YDNAARAMRG ARARTNFQYS SSSSSPSPSS PLASSSSSCS GCYSSGPTLS 120 QCSSNLAAPM APLPATMELV QRGPFLLPRI AQGFGQAPSQ PLQHHRWPIY DSSNMSSSPS 180 SSSNAKSSSI QPSLSTNIQS AATATTATTT TTTPIKSTGP LSPRDLCPDR HSSSSSTASF 240 ERHHDRSSSS TSSLWLQVAA QMQIQQQDHP PEQRLSPDEI CSGFIFDASN LNIPSLYEVS 300 CGLWSDTIAT TNSSSSSREF NLGTTTATPS SSCSAIQPQV TIAQQQQVAI PAASPLHDHR 360 EKEDRPNQDQ QNGGGGGGQV RNLTDEIIDD VESFSSSLLG DESTLMYDMQ LLQGLVCMQS 420 YLD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-21 | 27 | 95 | 10 | 79 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002966856.1 | 0.0 | uncharacterized protein DDB_G0271670 | ||||
TrEMBL | D8QN45 | 0.0 | D8QN45_SELML; Uncharacterized protein | ||||
STRING | EFJ38692 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G12980.1 | 7e-07 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 402810 |
Entrez Gene | 9632512 |
Publications ? help Back to Top | |||
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