PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 402806 | ||||||||
Common Name | SELMODRAFT_402806 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | G2-like | ||||||||
Protein Properties | Length: 272aa MW: 30770.5 Da PI: 10.2616 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 78 | 1.1e-24 | 115 | 168 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k++++W+p+LH+ Fv+ ve+L G ekA+P++ile+m+v++Lt+++v+SHLQkYR 402806 115 KTKVDWNPDLHRLFVQTVEEL-GLEKAIPSRILEIMGVESLTRHNVASHLQKYRA 168 6799*****************.********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-15 | 112 | 171 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 11.732 | 112 | 171 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 113 | 172 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.0E-23 | 115 | 169 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 272 aa Download sequence Send to blast |
MAITMQGIAV RFMFLKVDFP IAKFFKQAGS VLEFLLVRLI VMYEKKQWEI KSYAGESVNG 60 QLTSSNDEVT LDDELESIQR SASDHSGTVD AAQQEQHMQR VENCRKKERS LTTKKTKVDW 120 NPDLHRLFVQ TVEELGLEKA IPSRILEIMG VESLTRHNVA SHLQKYRAQR KRKRAESKQK 180 CSSLEPLNKR DCLHIQPSPS IPSTCLAMYG DSLLKNSISA WQTTGPPAKH SRNANKDESR 240 VRSKLSLPMG LKPPMIAGLI EELRKLAQRA K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 4e-14 | 114 | 172 | 4 | 62 | ARR10-B |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024532749.1 | 1e-106 | transcription factor BOA | ||||
Refseq | XP_024532755.1 | 1e-106 | transcription factor BOA | ||||
TrEMBL | D8QN41 | 0.0 | D8QN41_SELML; Uncharacterized protein | ||||
STRING | EFJ38041 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP2840 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44190.1 | 7e-21 | GOLDEN2-like 2 |
Link Out ? help Back to Top | |
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Phytozome | 402806 |
Entrez Gene | 9642244 |
Publications ? help Back to Top | |||
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