PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

402536

Common Name

SELMODRAFT_402536

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 274aa MW: 32039.3 Da PI: 5.8364

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
402536	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.7	3.2e-11	126	173	2	54
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r h ++Er+RR+r + ++ L++llP + +K +K +iL+ A++Y+++L 402536 126 RSRHMIAERQRRRREAELLAALKSLLPFP-----TKRDKLSILQGAIRYVQEL 173 77899**********************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.83E-12	124	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.84	124	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.5E-9	126	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-10	126	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.2E-9	130	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MESNLPHEQG AQQRNCGEMG DLIQRLLFDF EQQIQQEEEI QLQQQQRLHN QQQFQQQPHR 60 ENQQRQQQQQ EEEIQLQQQQ RLHNQQQFQQ QPHRENPQRQ QQQQDEGMVS DQESGLQNEE 120 NFSPIRSRHM IAERQRRRRE AELLAALKSL LPFPTKRDKL SILQGAIRYV QELRTDCAAS 180 RSERGEDSIT SKQQQQQQQQ QQQQQTSSGS SSTRIRVRVE QAALVSALEH IKALGYEVDS 240 IELNPPRTHA ELVVHPIVQL SCTTGLQELL DQL*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8QQZ5	0.0	D8QQZ5_SELML; Uncharacterized protein
STRING	EFJ37892	0.0	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	402536
Entrez Gene	9655854

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]