PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 402301
Common NameSELMODRAFT_402301
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 639aa    MW: 67234 Da    PI: 6.9451
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
402301genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH331.1e-10570614755
             HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
     HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
              +Er RR +i +++ +L +l+P+     +k  + a++L +A+eY+k+L+
  402301 570 VAERVRRTKISEGIKRLHDLVPNM----DKQTNTADMLNHAMEYMKQLK 614
             78*********************7....688****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.681563613IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-15566632IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.65E-10567618No hitNo description
Gene3DG3DSA:4.10.280.105.1E-16568633IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.4E-11569619IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-8570613IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 639 aa     Download sequence    Send to blast
MEPSAAAAAA AAADRGLGSS ITTTATTTSS TVDARSSKAA NESRLIFHHD HQQQLHHHHH  60
HHHLHQQQQQ QTQQSQQQQQ QQQQSLMRYH SAPGSLLCSL MDPGPLQQQQ QQQQQQQITH  120
HQVIPHQHLD MNSININMSI TNEIFSLDGA GAGAGGAGGT GNGSRDQGGG GGGAGVSSSN  180
GSMQSVALAR MGSGIDSAGQ QQYDHQDSYE AHHSSAQQQA AGGMIPLAFR VHHHQEQAHE  240
LERSRGGSNL NLPSSSSAVI GSGGGGGGGG ARGGGSSASP GGSSLHHHHF MPLIDHHAFD  300
PAAAAAALAS HGFDAQRAAA MIHPQDLDDD PTAASTNPLF AAAAAECGGL ALVKQKSSPA  360
DLLSKLVEGM ASRGGGGESS NISSPSDHHH HHHHHHHSAH HAAAAAAAAS LVIPALLQPL  420
ARSSSDSLSA SRIPGVNVEL GGGGGGDGSW DGGGGGGGGG GGGGALIMTM HDQVASSRKR  480
LRESDQVVEQ QQQQFAEEIG YCDELQVDGW SAWMPGFVVL SGWRFLQDQC GLEHPALVLS  540
RHLSLRKELQ DSVPCKLRAR RGCATHPRSV AERVRRTKIS EGIKRLHDLV PNMDKQTNTA  600
DMLNHAMEYM KQLKEKIEQM KEELRRCKEK CQGLCSEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1261275SGGGGGGGGARGGGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024531676.10.0putative lysozyme-like protein
TrEMBLD8QQ770.0D8QQ77_SELML; Uncharacterized protein
STRINGEFJ384120.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35460.18e-34bHLH family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]