PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

402071

Common Name

SELMODRAFT_402071

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NAC

Protein Properties

Length: 301aa MW: 33863.7 Da PI: 8.3995

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
402071	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	22.2	3.9e-07	145	248	15	127
NAM 15 vveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkge 117 +ve L+ ++++++++ +i++++ ++ +Pw+ + +++ + + k +++++r n +++ Wk++gk+++ + + l+ k+ L + + ++++ 402071 145 IVECLEDWISNQRINE--IIPDTNFFSKHPWNVI---TPGSSTIT-LIAPLKWKRSSQRDNTTIEGCHWKQQGKQESFVL--RGLKVEKRNLSYIATE-QHSS 238 5677899999999776..8************6...23334444.4444555567899999999999*****999..45678999**9544.4446 PP NAM 118 ktdWvmheyr 127 + + ey 402071 239 DLSFSLVEYV 248 7777777776 PP

Sequence ? help Back to Top
Protein Sequence Length: 301 aa Download sequence Send to blast
MAASGAAMLC ALPGCTKLAF FQESSGKQHE CCGRTHHLME MVRRNNGLLL NPPKLDGRCQ 60 LSSCNHPVWS GDHDFCCKRH ALECLDQTQS IVARKCELPG CDLPVCVETT ASGGIRVHDF 120 CGWSHAKLSR SQGKRRPDVL SADRIVECLE DWISNQRINE IIPDTNFFSK HPWNVITPGS 180 STITLIAPLK WKRSSQRDNT TIEGCHWKQQ GKQESFVLRG LKVEKRNLSY IATEQHSSDL 240 SFSLVEYVLS DHPQFGAFKI NARERAREKK VRVDKKKRKV DDDVKMLVDG FLADSPEVIF 300 *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	274	279	KKKRKV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D8QPH5	0.0	D8QPH5_SELML; Uncharacterized protein
STRING	EFJ37621	0.0	(Selaginella moellendorffii)

Link Out ? help Back to Top
Phytozome	402071
Entrez Gene	9633267

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]