PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

402040

Common Name

SELMODRAFT_402040

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

G2-like

Protein Properties

Length: 397aa MW: 44807.1 Da PI: 5.2782

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
402040	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.9	9.7e-33	228	283	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ 402040 228 KARRCWSPELHRRFVNALQQLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 283 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-29	225	286	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.78E-18	225	286	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.487	225	285	IPR017930	Myb domain
TIGRFAMs	TIGR01557	3.5E-27	228	283	IPR006447	Myb domain, plants
Pfam	PF00249	1.4E-7	230	281	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009266	Biological Process	response to temperature stimulus
GO:0009740	Biological Process	gibberellic acid mediated signaling pathway
GO:0010452	Biological Process	histone H3-K36 methylation
GO:0048579	Biological Process	negative regulation of long-day photoperiodism, flowering
GO:1903507	Biological Process	negative regulation of nucleic acid-templated transcription
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MNPEEEFGQA EGPDLTLGCA IAKRDSSDQQ TRRRMEDYLQ ALQQERQKIE AFKRELPCCM 60 NLLDQAIQST RGCLDESYKT EMEEENPPKL ELFLENRSGF RLGKPKSEAE DHRDFEERPS 120 TPKQNWMQLA CFPSQSPRED EEFETRKALR SSTASADSGA FAPFVRDKKW DQAELCLSSS 180 ICLSLEQKKT GFIKFQGNES NLPLVELSLQ QMPSSGICSN STLHQQRKAR RCWSPELHRR 240 FVNALQQLGG SQVATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRPATV APGTAAQKSP 300 QVVVLGSIWV PPEYAVFDHH QAAPSMQSTP LQQSKAQDFF ANLHASPAEP MVFYEKQELL 360 KSSKEEGEVL SPRKASATTA SEEEDDGDVT EAEEQR*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MNPEEEFGQA EGPDLTLGCA IAKRDSSDQQ TRRRMEDYLQ ALQQERQKIE AFKRELPCCM  60
NLLDQAIQST RGCLDESYKT EMEEENPPKL ELFLENRSGF RLGKPKSEAE DHRDFEERPS  120
TPKQNWMQLA CFPSQSPRED EEFETRKALR SSTASADSGA FAPFVRDKKW DQAELCLSSS  180
ICLSLEQKKT GFIKFQGNES NLPLVELSLQ QMPSSGICSN STLHQQRKAR RCWSPELHRR  240
FVNALQQLGG SQVATPKQIR ELMKVDGLTN DEVKSHLQKY RLHTRRPATV APGTAAQKSP  300
QVVVLGSIWV PPEYAVFDHH QAAPSMQSTP LQQSKAQDFF ANLHASPAEP MVFYEKQELL  360
KSSKEEGEVL SPRKASATTA SEEEDDGDVT EAEEQR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-14	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-14	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-14	228	281	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-14	228	281	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-14	228	281	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-14	228	281	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-14	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-14	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-14	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-14	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-14	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-14	228	281	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00261	DAP	Transfer from AT2G03500	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002960068.1	0.0	transcription factor HHO2
TrEMBL	D8QPE3	0.0	D8QPE3_SELML; Uncharacterized protein
STRING	EFJ37607	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4303	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	4e-59	G2-like family protein

Link Out ? help Back to Top
Phytozome	402040
Entrez Gene	9656231

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]