PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 39814 | ||||||||
Common Name | SELMODRAFT_39806, SELMODRAFT_39814 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | MYB_related | ||||||||
Protein Properties | Length: 55aa MW: 6161.08 Da PI: 10.7296 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.5 | 6.5e-13 | 20 | 55 | 3 | 40 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 ++T+ Ed +v+a+ ++G++ W+tIar ++ gRt++ + 39814 20 PFTAAEDAAIVRAHLLHGNK-WATIARLLP-GRTDNAI 55 89******************.*********.****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-7 | 1 | 25 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.54E-16 | 2 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.07 | 13 | 55 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.1E-10 | 20 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.47E-8 | 20 | 55 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-14 | 26 | 55 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 55 aa Download sequence Send to blast |
GKSCRLRWCN QLSPQVEHRP FTAAEDAAIV RAHLLHGNKW ATIARLLPGR TDNAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-17 | 1 | 55 | 42 | 96 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (PubMed:23067202, PubMed:23603962). Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA (PubMed:18162593, PubMed:9678577). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB44 is enhanced by direct interaction between MYB44 and PYL8 (PubMed:24894996). Transcriptional activator of WRKY70 by direct binding to its promoter region, especially at 5'-TAACNG-3' and 5'-CNGTTA-3' symmetric motifs (PubMed:23067202, PubMed:23603962). Activates salicylic acid (SA)- mediated defenses and subsequent resistance to biotrophic pathogen P.syringae pv. tomato DC3000, but represses jasmonic acid (JA)-mediated defenses responses against the necrotrophic pathogen A.brassicicola (PubMed:23067202). {ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202, ECO:0000269|PubMed:23603962, ECO:0000269|PubMed:24894996, ECO:0000269|PubMed:9678577}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By drought, cold, high salinity, cadmium (CdCl(2)), salicylic acid (SA), jasmonate (JA), ethylene, gibberellic acid (GA), and ABA (PubMed:16463103, PubMed:18162593, PubMed:23067202). The induction by JA is COI1-dependent (PubMed:23067202). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18162593, ECO:0000269|PubMed:23067202}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024517571.1 | 3e-33 | transcription factor MYB77-like | ||||
Refseq | XP_024523358.1 | 3e-33 | transcription factor MYB77-like | ||||
Swissprot | Q9FDW1 | 9e-27 | MYB44_ARATH; Transcription factor MYB44 | ||||
TrEMBL | D8SX18 | 5e-33 | D8SX18_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ04907 | 8e-34 | (Selaginella moellendorffii) | ||||
STRING | EFJ11007 | 8e-34 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 4e-29 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | 39814 |
Entrez Gene | 9637048 | 9652002 |