PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 39810 | ||||||||
Common Name | SELMODRAFT_39807, SELMODRAFT_39810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | MYB_related | ||||||||
Protein Properties | Length: 55aa MW: 6284.29 Da PI: 10.9248 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.9e-16 | 18 | 55 | 1 | 40 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 r+++T+eEd +v+a++ +G++ W++Iar+++ gRt++ + 39810 18 RKPFTEEEDRAIVKAHAIHGNK-WASIARMLP-GRTDNAI 55 789*******************.*********.****975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.7E-9 | 1 | 25 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.14E-18 | 2 | 55 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.044 | 13 | 55 | IPR017930 | Myb domain |
SMART | SM00717 | 1.5E-5 | 17 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-13 | 18 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.79E-10 | 20 | 55 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-16 | 26 | 55 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 55 aa Download sequence Send to blast |
GKSCRLRWCN QLNPVVKRKP FTEEEDRAIV KAHAIHGNKW ASIARMLPGR TDNAI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-21 | 1 | 55 | 42 | 96 | B-MYB |
Search in ModeBase |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002972038.2 | 7e-33 | transcription factor MYB1 | ||||
Refseq | XP_002972584.2 | 6e-33 | transcription factor MYB1 | ||||
Swissprot | Q42575 | 1e-24 | MYB1_ARATH; Transcription factor MYB1 | ||||
TrEMBL | D8RLN8 | 2e-33 | D8RLN8_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ26670 | 4e-34 | (Selaginella moellendorffii) | ||||
STRING | EFJ26955 | 4e-34 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55730.1 | 3e-28 | myb domain protein 109 |
Link Out ? help Back to Top | |
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Phytozome | 39810 |
Entrez Gene | 9640681 | 9651558 |
Publications ? help Back to Top | |||
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