PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 39729 | ||||||||
Common Name | SELMODRAFT_451355, WOX7-2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | WOX | ||||||||
Protein Properties | Length: 64aa MW: 7554.54 Da PI: 11.7465 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.3 | 4.5e-17 | 3 | 63 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++ q++ Le+l+ +p +++ +e++++l ++e++V++WFqNr+a+ ++ 39729 3 RQRWAPSQAQVKLLESLYDVgMGTPHKQRVREITAELsqlgPVNESNVYNWFQNRKARTRR 63 89*****************88*****************9999****************997 PP | |||||||
2 | Wus_type_Homeobox | 93.5 | 1.8e-30 | 2 | 64 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +r+RW+P++ Q+k+Le+ly+ G+ tP k+++++itaeL++ G +++ NV++WFQNrkaR r++ 39729 2 TRQRWAPSQAQVKLLESLYDVGMGTPHKQRVREITAELSQLGPVNESNVYNWFQNRKARTRRR 64 789**********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 9.2E-4 | 1 | 64 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 12.519 | 1 | 64 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.84E-14 | 2 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.0E-14 | 3 | 63 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-11 | 3 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.21E-4 | 3 | 64 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 64 aa Download sequence Send to blast |
TTRQRWAPSQ AQVKLLESLY DVGMGTPHKQ RVREITAELS QLGPVNESNV YNWFQNRKAR 60 TRRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024524489.1 | 5e-40 | WUSCHEL-related homeobox 8 | ||||
Swissprot | Q5QMM3 | 3e-23 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | D8RWE8 | 7e-39 | D8RWE8_SELML; Uncharacterized protein WOX7-2 | ||||
STRING | EFJ23657 | 1e-39 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1873 | 16 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20700.1 | 2e-25 | WUSCHEL related homeobox 14 |
Link Out ? help Back to Top | |
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Phytozome | 39729 |
Entrez Gene | 9629953 |
Publications ? help Back to Top | |||
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