PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 39509 | ||||||||
Common Name | RAX1-1_2, RAX1-2, SELMODRAFT_39504, SELMODRAFT_39509 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 9927.38 Da PI: 9.7917 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.7 | 4.8e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed +l d+++++G+g +W t + + g++R++k+c++rw +yl 39509 14 KGPWSPDEDVRLRDYIQRHGTGgNWITLPGKAGLNRCGKSCRLRWVNYL 62 79*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.1E-22 | 5 | 65 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.376 | 9 | 66 | IPR017930 | Myb domain |
SMART | SM00717 | 7.8E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.0E-15 | 14 | 62 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.15E-19 | 15 | 87 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.53E-7 | 16 | 62 | No hit | No description |
PROSITE profile | PS50090 | 4.008 | 63 | 88 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-8 | 66 | 87 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MGRTPCCDKA AVKKGPWSPD EDVRLRDYIQ RHGTGGNWIT LPGKAGLNRC GKSCRLRWVN 60 YLRPDIKRGS FTPEEEKRIC DLHASIGS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}. | |||||
UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002975598.2 | 1e-61 | transcription factor RAX1, partial | ||||
Swissprot | Q9FKL2 | 1e-44 | MYB36_ARATH; Transcription factor MYB36 | ||||
Swissprot | Q9SJL7 | 1e-44 | RAX2_ARATH; Transcription factor RAX2 | ||||
TrEMBL | D8RRE5 | 8e-59 | D8RRE5_SELML; Uncharacterized protein RAX1-1_2 (Fragment) | ||||
STRING | EFJ23227 | 1e-59 | (Selaginella moellendorffii) | ||||
STRING | EFJ25230 | 1e-59 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 5e-47 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | 39509 |
Entrez Gene | 9630422 | 9642198 |
Publications ? help Back to Top | |||
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