PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 39139 | ||||||||
Common Name | SELMODRAFT_39139 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 59aa MW: 7062.01 Da PI: 10.8225 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.2 | 2.5e-10 | 30 | 59 | 16 | 47 |
HHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 16 vkqlGggtWktIartmgkgRtlkqcksrwqky 47 + l ++ W+ Ia++++ gRt++++k+ w+++ 39139 30 HSILRNR-WSVIASHIP-GRTDNEIKNQWNTH 59 7788999.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.0E-6 | 1 | 23 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.29E-14 | 1 | 59 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.2 | 10 | 59 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-13 | 27 | 59 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-8 | 29 | 59 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.01E-6 | 34 | 59 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 59 aa Download sequence Send to blast |
CRLRWTNYLR PDIKRGGITA QDELPNIWLH SILRNRWSVI ASHIPGRTDN EIKNQWNTH |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-13 | 1 | 58 | 45 | 102 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002980305.2 | 3e-31 | transcription factor MYB53 | ||||
Refseq | XP_024518613.1 | 4e-31 | transcription factor MYB106 | ||||
Refseq | XP_024541225.1 | 4e-31 | transcription factor MYB106 | ||||
Refseq | XP_024541226.1 | 4e-31 | transcription factor MYB106-like | ||||
Swissprot | Q9FJP2 | 1e-24 | MYB53_ARATH; Transcription factor MYB53 | ||||
TrEMBL | D8QVN0 | 1e-35 | D8QVN0_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ36484 | 2e-36 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G65230.1 | 5e-27 | myb domain protein 53 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 39139 |
Entrez Gene | 9643231 |
Publications ? help Back to Top | |||
---|---|---|---|
|