PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 38997 | ||||||||
Common Name | SELMODRAFT_28982, SELMODRAFT_38997 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ZF-HD | ||||||||
Protein Properties | Length: 72aa MW: 7882.78 Da PI: 6.0772 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.7 | 4.4e-31 | 2 | 56 | 3 | 60 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 +vrY+eClkNhAa +Ggha+DGCgEfmp+++ + ++++C AC+CHRnFHRreve e 38997 2 AVRYRECLKNHAAGIGGHALDGCGEFMPNKE---DESSMRCGACDCHRNFHRREVEGE 56 69**************************944...469*****************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-18 | 2 | 56 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 6.2E-27 | 3 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.8E-28 | 4 | 53 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.522 | 5 | 52 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 72 aa Download sequence Send to blast |
KAVRYRECLK NHAAGIGGHA LDGCGEFMPN KEDESSMRCG ACDCHRNFHR REVEGEKPIC 60 DLCKEDDGTA GG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024516488.1 | 5e-47 | zinc-finger homeodomain protein 2-like | ||||
Refseq | XP_024538440.1 | 4e-47 | zinc-finger homeodomain protein 7-like | ||||
Swissprot | O64722 | 8e-22 | ZHD3_ARATH; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | D8S3H5 | 4e-45 | D8S3H5_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ12039 | 7e-46 | (Selaginella moellendorffii) | ||||
STRING | EFJ21268 | 7e-46 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 3e-24 | homeobox protein 21 |
Link Out ? help Back to Top | |
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Phytozome | 38997 |
Entrez Gene | 9642901 | 9657582 |
Publications ? help Back to Top | |||
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