PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 38502 | ||||||||
Common Name | SELMODRAFT_105485, SELMODRAFT_38502 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 75aa MW: 8420.54 Da PI: 10.7693 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 67.2 | 3.1e-21 | 18 | 67 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr++ +g+WvAeIr+p++ r r +lg+f ta+eAa+a+++a+k+l+g 38502 18 TYRGVRQRT-WGKWVAEIREPKK---RSRLWLGSFATADEAARAYDEAAKRLYG 67 69****999.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.30E-27 | 17 | 75 | No hit | No description |
PROSITE profile | PS51032 | 22.458 | 18 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.2E-31 | 18 | 75 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.7E-31 | 18 | 75 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-21 | 18 | 75 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.0E-15 | 18 | 67 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-11 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.1E-11 | 41 | 57 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 75 aa Download sequence Send to blast |
SKKGSMRGKG GPENASCTYR GVRQRTWGKW VAEIREPKKR SRLWLGSFAT ADEAARAYDE 60 AAKRLYGPEA HLNLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-17 | 19 | 75 | 6 | 63 | ATERF1 |
3gcc_A | 1e-17 | 19 | 75 | 6 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that binds to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by high-salt and drought stresses. {ECO:0000269|PubMed:20049613}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007145629.1 | 8e-41 | hypothetical protein PHAVU_007G255100g | ||||
Refseq | XP_016709356.1 | 8e-41 | PREDICTED: dehydration-responsive element-binding protein 2F-like | ||||
Refseq | XP_021847277.1 | 6e-41 | dehydration-responsive element-binding protein 2F | ||||
Swissprot | Q10R18 | 6e-39 | DRE2E_ORYSJ; Dehydration-responsive element-binding protein 2E | ||||
TrEMBL | D8RQK3 | 1e-47 | D8RQK3_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ22448 | 2e-48 | (Selaginella moellendorffii) | ||||
STRING | EFJ25463 | 2e-48 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 1e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | 38502 |
Entrez Gene | 9637764 | 9649768 |
Publications ? help Back to Top | |||
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