PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 37570 | ||||||||
Common Name | SELMODRAFT_37566, SELMODRAFT_37570 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | LBD | ||||||||
Protein Properties | Length: 104aa MW: 11204 Da PI: 8.5036 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 103.4 | 2e-32 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++ +++a+pe++r+++++sl+yeA+ r+ +PvyGavg++++++++++q++++++l 37570 2 SCNGCRVLRKGCSDSCALRPCLqwiegAEAQGHATVFVAKFFGRAGLMGFIAAVPENQRPALFRSLLYEACGRTVNPVYGAVGLLWSGNWHVCQAAVDTVL 102 6*********************9999888899***************************************************************998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 18.39 | 1 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.6E-27 | 2 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 104 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDSCALR PCLQWIEGAE AQGHATVFVA KFFGRAGLMG FIAAVPENQR 60 PALFRSLLYE ACGRTVNPVY GAVGLLWSGN WHVCQAAVDT VLRG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002980518.2 | 4e-72 | uncharacterized protein LOC9648216 | ||||
Refseq | XP_002984556.2 | 4e-72 | uncharacterized protein LOC9644611 | ||||
Swissprot | Q9FN11 | 2e-62 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
Swissprot | Q9SZE8 | 2e-62 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | D8SB10 | 1e-70 | D8SB10_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ14201 | 2e-71 | (Selaginella moellendorffii) | ||||
STRING | EFJ18169 | 2e-71 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 7e-65 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | 37570 |
Entrez Gene | 9644611 | 9648216 |
Publications ? help Back to Top | |||
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