PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 37324 | ||||||||
Common Name | SELMODRAFT_126488 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | HSF | ||||||||
Protein Properties | Length: 176aa MW: 20216.9 Da PI: 10.0453 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 117.3 | 8.9e-37 | 15 | 107 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y+++ed++++ ++sw+ +gn f+v++ +ef++++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF ++ F kgkk+ll+ i+ 37324 15 FLNKTYDMVEDPSTDPIVSWNPSGNGFIVWNLNEFQQQLLPKFFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFGNEGFLKGKKQLLKGIH 102 9****************************************************************999.........******************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 rkks+ 37324 103 RKKSA 107 **986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.4E-39 | 5 | 98 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.33E-34 | 10 | 104 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 6.2E-57 | 11 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-21 | 15 | 38 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 7.4E-32 | 15 | 104 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-21 | 53 | 65 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 54 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.4E-21 | 66 | 78 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
PAQPMDSSNS APPPFLNKTY DMVEDPSTDP IVSWNPSGNG FIVWNLNEFQ QQLLPKFFKH 60 NNFSSFVRQL NTYGFRKVDP DRWEFGNEGF LKGKKQLLKG IHRKKSASHQ PPAVQQPQPQ 120 PQPSSKPACV EVGKFGLEGE IERLKRDKNV LMSELVRLRQ QQQQTDSDLQ MILQRL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 2e-28 | 1 | 106 | 15 | 131 | Heat shock factor protein 1 |
5d5v_B | 2e-28 | 1 | 106 | 15 | 131 | Heat shock factor protein 1 |
5d5v_D | 2e-28 | 1 | 106 | 15 | 131 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002987626.2 | 1e-125 | heat stress transcription factor A-2e | ||||
Swissprot | Q84T61 | 3e-75 | HSFA1_ORYSJ; Heat stress transcription factor A-1 | ||||
TrEMBL | D8SWC4 | 1e-126 | D8SWC4_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ11201 | 1e-127 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 2e-63 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Phytozome | 37324 |
Entrez Gene | 9630277 |
Publications ? help Back to Top | |||
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