PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 36139
Common NameSELMODRAFT_451784
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family NAC
Protein Properties Length: 155aa    MW: 18157.6 Da    PI: 9.7783
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
36139genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM183.16.8e-5711301129
    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvg 101
            +ppGfrFhPtdeelv +yL+kkv++kk++l +vi+e+d+yk+ePwdL++  k+ + e++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k +l+g
  36139   1 VPPGFRFHPTDEELVGYYLQKKVASKKIDL-DVIHEIDLYKLEPWDLHEkcKIGSaEQTEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIHA-KYKLIG 102
            69****************************.9***************852444333666*************************************9.999*** PP

    NAM 102 lkktLvfykgrapkgektdWvmheyrle 129
            ++ktLvfy+grap+g+ktdW+mheyrle
  36139 103 MRKTLVFYRGRAPNGQKTDWIMHEYRLE 130
            **************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100559.5131153IPR003441NAC domain
SuperFamilySSF1019412.48E-612153IPR003441NAC domain
PfamPF023656.6E-302129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
VPPGFRFHPT DEELVGYYLQ KKVASKKIDL DVIHEIDLYK LEPWDLHEKC KIGSAEQTEW  60
YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIHAKYKL IGMRKTLVFY RGRAPNGQKT  120
DWIMHEYRLE EDISSSGSNN NDDGWVVCRV FKKRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A9e-56115520170NAC domain-containing protein 19
3swm_B9e-56115520170NAC domain-containing protein 19
3swm_C9e-56115520170NAC domain-containing protein 19
3swm_D9e-56115520170NAC domain-containing protein 19
3swp_A9e-56115520170NAC domain-containing protein 19
3swp_B9e-56115520170NAC domain-containing protein 19
3swp_C9e-56115520170NAC domain-containing protein 19
3swp_D9e-56115520170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002980632.21e-113NAC domain-containing protein 105
SwissprotQ9SL413e-88NAC37_ARATH; NAC domain-containing protein 37
TrEMBLD8S0Z91e-112D8S0Z9_SELML; Uncharacterized protein
TrEMBLD8S1001e-113D8S100_SELML; ANAC012/NST3/SND1, specific transcriptional repressor/ transcription activator/ transcription factor-like protein (Fragment)
TrEMBLD8SBM81e-113D8SBM8_SELML; Uncharacterized protein VND3-2 (Fragment)
STRINGEFJ182831e-114(Selaginella moellendorffii)
STRINGEFJ220211e-113(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.17e-78vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  4. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]