PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 35907 | ||||||||
Common Name | SELMODRAFT_35907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | G2-like | ||||||||
Protein Properties | Length: 133aa MW: 15316.8 Da PI: 10.6934 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 109.6 | 1.6e-34 | 7 | 61 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtpeLHerFveav+qLGG+ekAtPk+++++m+vkgLtl+h+kSHLQk+Rl 35907 7 KPRLRWTPELHERFVEAVTQLGGAEKATPKSVMRIMGVKGLTLYHLKSHLQKFRL 61 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.009 | 4 | 64 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-33 | 5 | 62 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.34E-17 | 6 | 62 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.1E-24 | 7 | 62 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.4E-9 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 6.6E-26 | 85 | 131 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
ISASEPKPRL RWTPELHERF VEAVTQLGGA EKATPKSVMR IMGVKGLTLY HLKSHLQKFR 60 LGKQLNKDTN VANRNACPHH FASSQITEAL RLQMEVQKKL HEQLEVQRHL QLRIEAQGKY 120 LQALLEKARE TFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-24 | 7 | 63 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-24 | 7 | 63 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-24 | 7 | 63 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-24 | 7 | 63 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024540307.1 | 5e-79 | protein PHR1-LIKE 3 | ||||
Swissprot | Q94A57 | 8e-58 | PHL2_ARATH; Protein PHR1-LIKE 2 | ||||
TrEMBL | D8S864 | 1e-92 | D8S864_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ19363 | 2e-93 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24120.1 | 3e-60 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | 35907 |
Entrez Gene | 9634483 |
Publications ? help Back to Top | |||
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