PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

34848

Common Name

SELMODRAFT_34848

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

bHLH

Protein Properties

Length: 154aa MW: 17334.2 Da PI: 9.6692

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
34848	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.9	7.5e-13	2	47	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq 34848 2 HIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 47 889*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.593	1	46	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-10	2	47	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.8E-17	2	58	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.06E-13	2	51	No hit	No description
SuperFamily	SSF47459	8.11E-18	2	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.6E-15	3	52	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
DHIMAERKRR EKLSQRFIAL SAIVPGLKKM DKASVLGDAI KYVKQLQERL KSLEEHVSRK 60 GVQSVAYCKK SVPMHGGSKQ EDKYGSVSDD DFCPPEIEAR YMGKNVLVRV HCEKRKGLLV 120 KCLGELEKLN LLVINASALS FSDTVHDFTF TAQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5gnj_A	2e-15	1	50	8	57	Transcription factor MYC2
5gnj_B	2e-15	1	50	8	57	Transcription factor MYC2
5gnj_E	2e-15	1	50	8	57	Transcription factor MYC2
5gnj_F	2e-15	1	50	8	57	Transcription factor MYC2
5gnj_G	2e-15	1	50	8	57	Transcription factor MYC2
5gnj_I	2e-15	1	50	8	57	Transcription factor MYC2
5gnj_M	2e-15	1	50	8	57	Transcription factor MYC2
5gnj_N	2e-15	1	50	8	57	Transcription factor MYC2
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	10	ERKRRE
2	6	11	RKRREK

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002972921.2	1e-107	transcription factor bHLH25
Refseq	XP_002988006.2	1e-107	uncharacterized protein LOC9656084
Swissprot	Q9T072	1e-43	BH025_ARATH; Transcription factor bHLH25
TrEMBL	D8RNU5	1e-109	D8RNU5_SELML; Uncharacterized protein (Fragment)
STRING	EFJ26142	1e-110	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP656	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	6e-46	bHLH family protein

Link Out ? help Back to Top
Phytozome	34848
Entrez Gene	9636509

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]