PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 33543
Common NameSELMODRAFT_23095
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GRAS
Protein Properties Length: 404aa    MW: 44430.8 Da    PI: 6.8401
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
33543genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS420.71.2e-128194041374
   GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104
            l++lL+ cA+av+s+dl+ a+ ++++ls las +gdpmqR+a+yf+e+Laar+++s+++lykal +++ s  + s+ +aa+++++ vsP+lkf++ltaNqaIl+
  33543  19 LIHLLYLCANAVASNDLQHANLFMEQLSGLASLTGDPMQRVATYFLEGLAARVTKSWPGLYKALYSTRLS--SDSDIAAARHILFSVSPYLKFGYLTANQAILD 120
            689*************************************************************887777..37888899999********************* PP

   GRAS 105 avegeervHiiDfdisqG...lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVn 205
            a++ge+ vH++D++++ G   lQW+aLlqa++sRpegpp+lRiT+v++    ++e l  +g++L++ Ae+l++pf+f++ va + ++le ++L vk+gEa+aV 
  33543 121 AMQGEKVVHVVDLEVGGGnsvLQWLALLQAFSSRPEGPPHLRITAVNE----KREVLALMGQKLTESAERLDIPFQFHP-VAVSPAALERDMLGVKSGEAVAVT 219
            ***************9886667**************************....99*************************.6888999***************** PP

   GRAS 206 lvlqlhrll.................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
            + +qlh+ll                 + ++ ++s++++vL+l+ slsPk++vvveqe++hn+  + erf+ al+yysa+fdsl+++lp++s+eri+vEr ++g+
  33543 220 SLMQLHSLLadekedgkvrggdvaprEAKAGTSSTISRVLQLLHSLSPKIMVVVEQESNHNG-ALHERFAPALHYYSAIFDSLDSTLPQHSSERITVERLIFGQ 322
            *************************966666667799***********************75.699************************************** PP

   GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
            ei+n+vaceg er erhetl++W++r+e+a F++  ls ++a qa++ll  ++ dgy+++ e+gsl+l+W+d p++svSaW+
  33543 323 EIRNIVACEGLERMERHETLSSWKRRFEQAHFSSSLLSPTTAVQAERLLTIHSPDGYKLHREKGSLILCWQDTPMLSVSAWK 404
            *********************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.2871384IPR005202Transcription factor GRAS
PfamPF035144.2E-12619404IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
ATATAPAPPP SSEERGLRLI HLLYLCANAV ASNDLQHANL FMEQLSGLAS LTGDPMQRVA  60
TYFLEGLAAR VTKSWPGLYK ALYSTRLSSD SDIAAARHIL FSVSPYLKFG YLTANQAILD  120
AMQGEKVVHV VDLEVGGGNS VLQWLALLQA FSSRPEGPPH LRITAVNEKR EVLALMGQKL  180
TESAERLDIP FQFHPVAVSP AALERDMLGV KSGEAVAVTS LMQLHSLLAD EKEDGKVRGG  240
DVAPREAKAG TSSTISRVLQ LLHSLSPKIM VVVEQESNHN GALHERFAPA LHYYSAIFDS  300
LDSTLPQHSS ERITVERLIF GQEIRNIVAC EGLERMERHE TLSSWKRRFE QAHFSSSLLS  360
PTTAVQAERL LTIHSPDGYK LHREKGSLIL CWQDTPMLSV SAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-751340313378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024532580.11e-158scarecrow-like protein 3 isoform X2
SwissprotQ9LPR81e-127SCL3_ARATH; Scarecrow-like protein 3
TrEMBLD8TBT00.0D8TBT0_SELML; Uncharacterized protein (Fragment)
STRINGEFJ058730.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP25641433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-130scarecrow-like 3
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]