PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

30433

Common Name

SELMODRAFT_30433

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NF-X1

Protein Properties

Length: 794aa MW: 86146.8 Da PI: 7.9238

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
30433	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	18.5	4.5e-06	239	256	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C+++CH+G+C+ C 30433 239 CGNHVCSRECHPGDCGDC 256 ****************99 PP
2	zf-NF-X1	22	3.6e-07	297	314	1	18
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H C+ lCH+GpCppC 30433 297 CGRHECINLCHLGPCPPC 314 ****************** PP
3	zf-NF-X1	17.2	1.1e-05	387	406	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H Cq+lCH G C pC q 30433 387 CGEHFCQELCHSGHCRPCLQ 406 ******************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57850	1.41E-7	12	78	No hit	No description
PROSITE profile	PS50016	8.938	18	73	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	21	70	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS50089	9.76	21	71	IPR001841	Zinc finger, RING-type
SMART	SM00438	0.32	120	138	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.18	121	136	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	2.83E-7	166	214	No hit	No description
SMART	SM00438	0.07	176	195	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.03	176	194	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	2.69E-8	229	274	No hit	No description
SMART	SM00438	1.5E-4	239	258	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.0035	239	256	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	5.55E-11	287	333	No hit	No description
SMART	SM00438	4.9E-4	297	316	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	9.8E-6	297	314	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	15	357	379	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.68	357	369	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	1.16E-6	377	429	No hit	No description
SMART	SM00438	1.3E-4	387	406	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	2.8E-4	387	404	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	0.013	444	462	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	28	444	461	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	0.03	497	523	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.021	497	512	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	120	526	551	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	0.65	532	553	IPR000967	Zinc finger, NF-X1-type
PROSITE profile	PS51061	10.391	622	703	IPR001374	R3H domain
Pfam	PF01424	5.2E-7	635	699	IPR001374	R3H domain
SuperFamily	SSF82708	5.49E-5	660	700	IPR001374	R3H domain
Gene3D	G3DSA:3.30.1370.50	5.8E-6	662	704	IPR001374	R3H domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009642	Biological Process	response to light intensity
GO:0009651	Biological Process	response to salt stress
GO:0009697	Biological Process	salicylic acid biosynthetic process
GO:0010188	Biological Process	response to microbial phytotoxin
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 794 aa Download sequence Send to blast
GALPQLAQGL LEKLQKGEME CMICYDMIGR NARVWSCSGC YSIFHLTCIR KWARAPTSVD 60 QSGNWRCPGC QAIQLSPAND LQYWCFCGQQ LEPPVDFYLT PHSCGGTCKK PLDKSKLGLC 120 QHICTLQCHP GPCPPCAAFA LPEACGCGRK VVTRRCIERD EGVVSCGYQC GGMLSCGRHY 180 CTRVCHKDEC GGCKVVVAVA CFCRRKLDRV VCGQVPVPGD VAGNGIFSCG SICGKLLPCG 240 NHVCSRECHP GDCGDCELSP ESVSTCPCKK TTLRALRRSC LDPVPTCGQE CGKYVSCGRH 300 ECINLCHLGP CPPCEVLVEQ KCRCGASSRV VPCNVATSTS DEHSFICDKK CEKKRNCGRH 360 RCNVKCCPSD SGDNHFCMLE CGKKLRCGEH FCQELCHSGH CRPCLQSSFT DLSCACGKSS 420 IPPPVPCGTP RPRCDFLCLV PQPCGHPATH TCHFGECPPC TVLVAKECVG QHVTMRNVPC 480 GSREIKCNRP CGKLRKCGVH PCGKTCHSDP CDSDDSSSLS CGQVCGASRR ECSHTCVAAC 540 HPGSPCPDVR CEFMETITCS CERLTAAVPC EMGGAATRDK APASQRKLSC DDDCVKTQRL 600 KSLADALGIE TNGDPLTAYG SSDCVQEMAK RDSQFVTAVE DRFKYLLLGP KSVACVTGLR 660 VHVFAPLPKD KREVIYQLAQ RWNLSSSSVG WEARRYLVVH VNSKSKMPGR LIKLNVVAPL 720 FNPGLDVDPK LVVALLDLPG EGDISRVVLR FAGECELIWL NDRNAITIFT DPSRAATALK 780 RVDHATPYHG AFVL

Sequence ? help Back to Top

Protein Sequence Length: 794 aa Download sequence Send to blast

GALPQLAQGL LEKLQKGEME CMICYDMIGR NARVWSCSGC YSIFHLTCIR KWARAPTSVD  60
QSGNWRCPGC QAIQLSPAND LQYWCFCGQQ LEPPVDFYLT PHSCGGTCKK PLDKSKLGLC  120
QHICTLQCHP GPCPPCAAFA LPEACGCGRK VVTRRCIERD EGVVSCGYQC GGMLSCGRHY  180
CTRVCHKDEC GGCKVVVAVA CFCRRKLDRV VCGQVPVPGD VAGNGIFSCG SICGKLLPCG  240
NHVCSRECHP GDCGDCELSP ESVSTCPCKK TTLRALRRSC LDPVPTCGQE CGKYVSCGRH  300
ECINLCHLGP CPPCEVLVEQ KCRCGASSRV VPCNVATSTS DEHSFICDKK CEKKRNCGRH  360
RCNVKCCPSD SGDNHFCMLE CGKKLRCGEH FCQELCHSGH CRPCLQSSFT DLSCACGKSS  420
IPPPVPCGTP RPRCDFLCLV PQPCGHPATH TCHFGECPPC TVLVAKECVG QHVTMRNVPC  480
GSREIKCNRP CGKLRKCGVH PCGKTCHSDP CDSDDSSSLS CGQVCGASRR ECSHTCVAAC  540
HPGSPCPDVR CEFMETITCS CERLTAAVPC EMGGAATRDK APASQRKLSC DDDCVKTQRL  600
KSLADALGIE TNGDPLTAYG SSDCVQEMAK RDSQFVTAVE DRFKYLLLGP KSVACVTGLR  660
VHVFAPLPKD KREVIYQLAQ RWNLSSSSVG WEARRYLVVH VNSKSKMPGR LIKLNVVAPL  720
FNPGLDVDPK LVVALLDLPG EGDISRVVLR FAGECELIWL NDRNAITIFT DPSRAATALK  780
RVDHATPYHG AFVL

Functional Description ? help Back to Top
Source	Description
UniProt	Mediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269\|PubMed:16905136, ECO:0000269\|PubMed:18069941, ECO:0000269\|PubMed:19704430}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269\|PubMed:16905136, ECO:0000269\|PubMed:18069941, ECO:0000269\|PubMed:19704430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002969132.2	0.0	NF-X1-type zinc finger protein NFXL1
Swissprot	Q9SY59	0.0	NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBL	D8RD39	0.0	D8RD39_SELML; Uncharacterized protein (Fragment)
STRING	EFJ30248	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3950	14	20

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10170.1	0.0	NF-X-like 1

Link Out ? help Back to Top
Phytozome	30433
Entrez Gene	9651256

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]