PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29850
Common NameSELMODRAFT_29850, SELMODRAFT_9604
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB_related
Protein Properties Length: 58aa    MW: 7065.02 Da    PI: 10.1161
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29850genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-171758144
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     r+ W ++E++llv a+++lG++ W+ Ia+ ++ gRt++ +k++w
            29850 17 RDIWREDEEQLLVSAHNRLGNK-WADIAKLIP-GRTENAIKNHW 58
                     567*******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.6E-21158IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-9124IPR009057Homeodomain-like
PROSITE profilePS500904.182111IPR017877Myb-like domain
PROSITE profilePS5129422.0011258IPR017930Myb domain
SMARTSM007171.6E-61658IPR001005SANT/Myb domain
PfamPF002492.0E-152058IPR001005SANT/Myb domain
CDDcd001671.96E-82058No hitNo description
Gene3DG3DSA:1.10.10.602.5E-162558IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 58 aa     Download sequence    Send to blast
KQCRERWHNH LKPDIKRDIW REDEEQLLVS AHNRLGNKWA DIAKLIPGRT ENAIKNHW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-251584097MYB PROTO-ONCOGENE PROTEIN
1mse_C1e-251584097C-Myb DNA-Binding Domain
1msf_C1e-251584097C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
UniProtTranscription factor required for female gametophyte fertility (PubMed:23057675, PubMed:24068955). Acts redundantly with MYB119 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5 (PubMed:24068955). {ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:24068955}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002992026.25e-34myb-related protein B
SwissprotQ9FIM42e-27MY119_ARATH; Transcription factor MYB119
SwissprotQ9FY601e-27MYB64_ARATH; Transcription factor MYB64
TrEMBLD8QZP13e-34D8QZP1_SELML; Uncharacterized protein (Fragment)
STRINGEFJ068755e-35(Selaginella moellendorffii)
STRINGEFJ348355e-35(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.15e-30myb domain protein 64
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]