PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29750 | ||||||||
Common Name | SELMODRAFT_29750 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | MYB_related | ||||||||
Protein Properties | Length: 59aa MW: 6983.12 Da PI: 10.4709 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.8 | 1e-07 | 36 | 57 | 26 | 48 |
HHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 26 tIartmgkgRtlkqcksrwqkyl 48 Ia++++ gR ++++k++w+++l 29750 36 VIASHIP-GRIDNEIKNHWNTHL 57 7******.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.852 | 1 | 13 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.91E-11 | 1 | 59 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.7E-7 | 1 | 24 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.74E-4 | 35 | 57 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-9 | 35 | 58 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-5 | 36 | 57 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 59 aa Download sequence Send to blast |
CRLRWTNYLR PDIKRGGITA QEELLNIWLH SILLSVIASH IPGRIDNEIK NHWNTHLKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024518613.1 | 4e-30 | transcription factor MYB106 | ||||
Refseq | XP_024518621.1 | 4e-30 | transcription factor MYB106 | ||||
Refseq | XP_024541225.1 | 4e-30 | transcription factor MYB106 | ||||
Refseq | XP_024541226.1 | 4e-30 | transcription factor MYB106-like | ||||
Swissprot | Q9FJP2 | 2e-22 | MYB53_ARATH; Transcription factor MYB53 | ||||
TrEMBL | D8SAA5 | 4e-35 | D8SAA5_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ18722 | 6e-36 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65230.1 | 9e-25 | myb domain protein 53 |
Link Out ? help Back to Top | |
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Phytozome | 29750 |
Entrez Gene | 9648085 |
Publications ? help Back to Top | |||
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