PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29498
Common NameSELMODRAFT_29498, SELMODRAFT_29502
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family GATA
Protein Properties Length: 55aa    MW: 6281.29 Da    PI: 11.6165
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29498genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA40.63.4e-131241134
   GATA 11 lWRrgpdgnktLCnaCGlyyrkkg 34
           +WR gp g+ktLCnaCG+++++ +
  29498  1 QWRTGPLGPKTLCNACGVRFKSGR 24
           8********************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004010.0017135IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.9E-9149No hitNo description
Gene3DG3DSA:3.30.50.103.0E-8123IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.5E-11125IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 55 aa     Download sequence    Send to blast
QWRTGPLGPK TLCNACGVRF KSGRLFPEYR PAASPSFVPQ KHSNSHKKVL EMRRQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024525333.15e-32GATA transcription factor 21-like
SwissprotO826324e-29GATA9_ARATH; GATA transcription factor 9
TrEMBLD8QT283e-33D8QT28_SELML; Uncharacterized protein (Fragment)
STRINGEFJ340375e-34(Selaginella moellendorffii)
STRINGEFJ375445e-34(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.12e-31GATA transcription factor 9
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]