PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29495 | ||||||||
Common Name | SELMODRAFT_29495, SELMODRAFT_29496 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | GATA | ||||||||
Protein Properties | Length: 55aa MW: 6327.28 Da PI: 11.0288 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 42.6 | 8.6e-14 | 1 | 24 | 11 | 34 |
GATA 11 lWRrgpdgnktLCnaCGlyyrkkg 34 +WR gp+g+ktLCnaCG+++++ + 29495 1 QWRAGPEGPKTLCNACGVRFKSGR 24 8********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.47E-8 | 1 | 49 | No hit | No description |
Pfam | PF00320 | 1.7E-11 | 1 | 25 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.8E-9 | 1 | 22 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 5.7E-4 | 1 | 35 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 55 aa Download sequence Send to blast |
QWRAGPEGPK TLCNACGVRF KSGRLFPEYR PALSPTFLSE VHSNSHRKVL EMRRQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024522778.1 | 8e-32 | nitrogen regulatory protein GLN3-like | ||||
Swissprot | Q8LAU9 | 3e-28 | GATA1_ARATH; GATA transcription factor 1 | ||||
TrEMBL | D8RFP5 | 3e-33 | D8RFP5_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ05626 | 4e-34 | (Selaginella moellendorffii) | ||||
STRING | EFJ28904 | 4e-34 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24050.1 | 1e-30 | GATA transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 29495 |
Entrez Gene | 9640860 | 9645535 |
Publications ? help Back to Top | |||
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