PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29437
Common NameSELMODRAFT_86653
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB
Protein Properties Length: 99aa    MW: 11605.5 Da    PI: 10.5791
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29437genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.22.8e-16251148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmg.kgRtlkqcksrwqkyl 48
                     rg+WT eEd ll++  k++G + +W+++++  g + R++k+c++rw++yl
            29437  2 RGPWTLEEDALLLRHMKLYGDRgNWRKVPKAAGcLLRCGKSCRLRWLNYL 51
                     89***********************************************7 PP
2Myb_DNA-binding49.21.2e-155799145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     rg+++++Ed l+++++ +lG++ W+ Ia +++ gR+++++k++w+
            29437 57 RGSFSEDEDALIIKLHSLLGNR-WSIIAGRIP-GRSDNEIKNYWN 99
                     89********************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.9E-12153IPR001005SANT/Myb domain
PROSITE profilePS5129416.285151IPR017930Myb domain
SuperFamilySSF466898.61E-27298IPR009057Homeodomain-like
PfamPF002494.4E-15251IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-22358IPR009057Homeodomain-like
CDDcd001671.03E-8451No hitNo description
PROSITE profilePS5129424.1765299IPR017930Myb domain
SMARTSM007172.2E-85699IPR001005SANT/Myb domain
PfamPF002491.4E-145799IPR001005SANT/Myb domain
CDDcd001671.40E-95999No hitNo description
Gene3DG3DSA:1.10.10.601.1E-225999IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
RRGPWTLEED ALLLRHMKLY GDRGNWRKVP KAAGCLLRCG KSCRLRWLNY LRPDLKRGSF  60
SEDEDALIIK LHSLLGNRWS IIAGRIPGRS DNEIKNYWN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-2629927121MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024527557.11e-63transcription repressor MYB5
SwissprotQ9SZP19e-46MYB4_ARATH; Transcription repressor MYB4
TrEMBLD8QQ836e-65D8QQ83_SELML; Uncharacterized protein (Fragment)
TrEMBLD8R8P79e-65D8R8P7_SELML; Uncharacterized protein (Fragment)
STRINGEFJ321012e-65(Selaginella moellendorffii)
STRINGEFJ377451e-65(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.14e-48myb domain protein 4
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  4. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  5. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  8. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]