PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 29146
Common NameSELMODRAFT_29146, SELMODRAFT_29148, WRKY_28, WRKY_3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family WRKY
Protein Properties Length: 106aa    MW: 11154.7 Da    PI: 9.3156
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
29146genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.94.8e-29154759
           EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
   WRKY  7 WrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
           WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d++v+++tYeg+Hnh+
  29146  1 WRKYGQKMAKGNPCPRAYYRCTMAsGCPVRKQVQRCADDTSVLVTTYEGSHNHQ 54
           ***********************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007742.3E-30155IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-28156IPR003657WRKY domain
PfamPF031069.7E-25154IPR003657WRKY domain
SuperFamilySSF1182907.45E-25156IPR003657WRKY domain
PROSITE profilePS5081128.013156IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
WRKYGQKMAK GNPCPRAYYR CTMASGCPVR KQVQRCADDT SVLVTTYEGS HNHQLPPAAT  60
SMASTTSAAA TMLLSGSTAS STDLSFMAGM LTGAPTISAT TPFPTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-231582076WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00428DAPTransfer from AT4G04450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024525176.12e-71WRKY transcription factor 6-like
SwissprotQ9XEC32e-48WRK42_ARATH; WRKY transcription factor 42
TrEMBLD8QSS57e-72D8QSS5_SELML; Uncharacterized protein WRKY_28 (Fragment)
STRINGEFJ339841e-72(Selaginella moellendorffii)
STRINGEFJ374921e-72(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.17e-36WRKY family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]