PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 29146 | ||||||||
Common Name | SELMODRAFT_29146, SELMODRAFT_29148, WRKY_28, WRKY_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | WRKY | ||||||||
Protein Properties | Length: 106aa MW: 11154.7 Da PI: 9.3156 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 91.9 | 4.8e-29 | 1 | 54 | 7 | 59 |
EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 7 WrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+a+d++v+++tYeg+Hnh+ 29146 1 WRKYGQKMAKGNPCPRAYYRCTMAsGCPVRKQVQRCADDTSVLVTTYEGSHNHQ 54 ***********************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00774 | 2.3E-30 | 1 | 55 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-28 | 1 | 56 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.7E-25 | 1 | 54 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.45E-25 | 1 | 56 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.013 | 1 | 56 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 106 aa Download sequence Send to blast |
WRKYGQKMAK GNPCPRAYYR CTMASGCPVR KQVQRCADDT SVLVTTYEGS HNHQLPPAAT 60 SMASTTSAAA TMLLSGSTAS STDLSFMAGM LTGAPTISAT TPFPTV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-23 | 1 | 58 | 20 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000250, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00428 | DAP | Transfer from AT4G04450 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024525176.1 | 2e-71 | WRKY transcription factor 6-like | ||||
Swissprot | Q9XEC3 | 2e-48 | WRK42_ARATH; WRKY transcription factor 42 | ||||
TrEMBL | D8QSS5 | 7e-72 | D8QSS5_SELML; Uncharacterized protein WRKY_28 (Fragment) | ||||
STRING | EFJ33984 | 1e-72 | (Selaginella moellendorffii) | ||||
STRING | EFJ37492 | 1e-72 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 7e-36 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | 29146 |
Entrez Gene | 9646887 | 9659937 |
Publications ? help Back to Top | |||
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