PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28794 | ||||||||
Common Name | SELMODRAFT_7330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | TCP | ||||||||
Protein Properties | Length: 50aa MW: 5706.55 Da PI: 10.161 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 88.3 | 1.7e-27 | 1 | 50 | 13 | 62 |
TCP 13 TkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikel 62 T++g+RdRRvRls+ +a++f+d+qd+LG+d++sk++eWLl++ak+ai++l 28794 1 TSKGLRDRRVRLSVATAIQFYDVQDRLGYDQPSKAVEWLLKKAKAAIDDL 50 99*********************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.8E-25 | 1 | 50 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.341 | 1 | 50 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 50 aa Download sequence Send to blast |
TSKGLRDRRV RLSVATAIQF YDVQDRLGYD QPSKAVEWLL KKAKAAIDDL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-22 | 1 | 50 | 5 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-22 | 1 | 50 | 5 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024522990.1 | 4e-26 | uncharacterized protein LOC112343562 | ||||
Refseq | XP_024522991.1 | 4e-26 | uncharacterized protein LOC112343562 | ||||
Refseq | XP_024522992.1 | 4e-26 | uncharacterized protein LOC112343562 | ||||
Refseq | XP_024522993.1 | 4e-26 | uncharacterized protein LOC112343562 | ||||
Swissprot | O82277 | 4e-23 | TCP10_ARATH; Transcription factor TCP10 | ||||
TrEMBL | D8RQ84 | 5e-27 | D8RQ84_SELML; Uncharacterized protein (Fragment) | ||||
TrEMBL | D8TDH0 | 5e-27 | D8TDH0_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ05334 | 8e-28 | (Selaginella moellendorffii) | ||||
STRING | EFJ25614 | 8e-28 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31070.1 | 1e-25 | TCP domain protein 10 |
Link Out ? help Back to Top | |
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Phytozome | 28794 |
Entrez Gene | 9663460 |
Publications ? help Back to Top | |||
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