PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 28598 | ||||||||
Common Name | SELMODRAFT_28595, SELMODRAFT_28598 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | SBP | ||||||||
Protein Properties | Length: 79aa MW: 9323.5 Da PI: 10.2343 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134.8 | 2.6e-42 | 6 | 79 | 2 | 75 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 CqvegC+adls k+yhrrhkvCevhsk+p+ +v+g+eqrfCqqCsrfh l efDe+krsCrrrL++hnerrrk 28598 6 CQVEGCQADLSGSKDYHRRHKVCEVHSKTPKNTVNGQEQRFCQQCSRFHLLPEFDEGKRSCRRRLQGHNERRRK 79 *************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51141 | 32.958 | 3 | 79 | IPR004333 | Transcription factor, SBP-box |
Gene3D | G3DSA:4.10.1100.10 | 5.9E-36 | 3 | 67 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 4.05E-39 | 4 | 79 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.7E-33 | 6 | 79 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 79 aa Download sequence Send to blast |
SVTPKCQVEG CQADLSGSKD YHRRHKVCEV HSKTPKNTVN GQEQRFCQQC SRFHLLPEFD 60 EGKRSCRRRL QGHNERRRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-31 | 6 | 79 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002978761.2 | 4e-52 | squamosa promoter-binding-like protein 2 | ||||
Refseq | XP_002984675.2 | 4e-52 | squamosa promoter-binding-like protein 2 | ||||
Swissprot | Q94JW8 | 4e-36 | SPL6_ARATH; Squamosa promoter-binding-like protein 6 | ||||
TrEMBL | D8S5P5 | 1e-50 | D8S5P5_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ14320 | 2e-51 | (Selaginella moellendorffii) | ||||
STRING | EFJ20208 | 2e-51 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-38 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | 28598 |
Entrez Gene | 9644805 | 9658710 |
Publications ? help Back to Top | |||
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