PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 27657 | ||||||||
Common Name | SELMODRAFT_27657 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | LBD | ||||||||
Protein Properties | Length: 109aa MW: 12231.2 Da PI: 7.8318 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 110.1 | 1.7e-34 | 1 | 100 | 3 | 101 |
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 aaCk++rr+C+++Cvlapyfp e+++ f ++lFG+sn++++l++ ++ +++d+++sl+ eA+ar+rdPvyG++g+i++l++++++l++el+++ke+l 27657 1 AACKFQRRRCSPECVLAPYFPVENTACFMSCKRLFGVSNMVRILTEGvQPAQKDDTIKSLILEADARQRDPVYGSAGIITTLREEVAKLQEELVVAKEQL 100 8******************************************998669999*******************************************99985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.338 | 1 | 100 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.2E-34 | 1 | 97 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
AACKFQRRRC SPECVLAPYF PVENTACFMS CKRLFGVSNM VRILTEGVQP AQKDDTIKSL 60 ILEADARQRD PVYGSAGIIT TLREEVAKLQ EELVVAKEQL SFLVSQLHQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-28 | 1 | 100 | 13 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-28 | 1 | 100 | 13 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024528143.1 | 3e-51 | putative cyclin-dependent serine/threonine-protein kinase DDB_G0272797/DDB_G0274007 | ||||
TrEMBL | D8QYQ6 | 2e-74 | D8QYQ6_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ34657 | 3e-75 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23660.2 | 4e-31 | LOB domain-containing protein 10 |
Link Out ? help Back to Top | |
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Phytozome | 27657 |
Entrez Gene | 9655540 |
Publications ? help Back to Top | |||
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