PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 270428 | ||||||||
Common Name | SELMODRAFT_270428 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 244aa MW: 27868.4 Da PI: 6.7163 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.5 | 1.4e-28 | 29 | 87 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmk....vkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHerFv+ave+LGG+e+AtPk il++m+ v+g+ + hvkSHLQkYRl 270428 29 KPRMRWTPELHERFVRAVEELGGAENATPKCILRVMNtyssVDGVNILHVKSHLQKYRL 87 79**********************************755558****************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.09E-15 | 28 | 88 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.8E-26 | 28 | 88 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.3E-20 | 29 | 88 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.5E-7 | 31 | 86 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.2E-19 | 119 | 164 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 244 aa Download sequence Send to blast |
MVPAAQSSRI SQISQQQQQP CSIISPVPKP RMRWTPELHE RFVRAVEELG GAENATPKCI 60 LRVMNTYSSV DGVNILHVKS HLQKYRLVKD LPPSPVAKQQ QSKQCSLELP SLNVETGLQI 120 TETLRLQLEV QKQLHEQLEI QRDLQKKIED HGRYLERMYN KTEEATRSCH KNSDEPSPGP 180 QEQEQRKHRQ TCDDQIHQAS GTTTSTADSF QPPLKKLKPS QEQEELQPVG DEDVDFSELW 240 KFT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 3e-18 | 29 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 3e-18 | 29 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 3e-18 | 29 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 3e-18 | 29 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 3e-18 | 29 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 3e-18 | 29 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 3e-18 | 29 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 3e-18 | 29 | 89 | 2 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024524637.1 | 1e-177 | protein PHOSPHATE STARVATION RESPONSE 1 | ||||
TrEMBL | D8QZD0 | 1e-178 | D8QZD0_SELML; Uncharacterized protein | ||||
STRING | EFJ34386 | 1e-179 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G28610.1 | 3e-44 | phosphate starvation response 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 270428 |
Entrez Gene | 9654528 |
Publications ? help Back to Top | |||
---|---|---|---|
|