PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 26594 | ||||||||
Common Name | SELMODRAFT_26594 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 175aa MW: 19338.6 Da PI: 4.8158 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.1e-19 | 14 | 63 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+Wv+eIr+p++ ++r++lg+f t+e+Aa+a++ a+ +l+g 26594 14 LYRGIRRRS-WGKWVSEIREPKK---KTRIWLGSFPTPEMAARAYDVAAISLKG 63 69****887.**********854...6***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.3E-12 | 13 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.75E-33 | 13 | 72 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.4E-32 | 14 | 72 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-22 | 14 | 71 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 7.3E-39 | 14 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.092 | 14 | 71 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-13 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-13 | 53 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
PQQQQSDQET QHPLYRGIRR RSWGKWVSEI REPKKKTRIW LGSFPTPEMA ARAYDVAAIS 60 LKGPKAVLNF PEFAYSLPQP AMVSPKSIQQ AAAAAALAFS SCSLGTSSSS NTKASYRSSL 120 ASEGQVNYVD EDMIFNMPDV VTDMAQAMLL APPRLSQEQS DEEDESGEEA SIWSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 11 | 72 | 11 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024516708.1 | 1e-116 | ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | D8RZ31 | 1e-125 | D8RZ31_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ22538 | 1e-126 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25490.1 | 9e-40 | C-repeat/DRE binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 26594 |
Entrez Gene | 9648846 |
Publications ? help Back to Top | |||
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