PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 25673 | ||||||||
Common Name | SELMODRAFT_15487, SELMODRAFT_25673 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 161aa MW: 18820.8 Da PI: 10.3322 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.7 | 9.2e-53 | 3 | 129 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104 pGfrFhPtdeelv +yL++kv++k+l++ evi+++diyk++PwdLp+++ ++e+ wyfF+ rd+ky++++r+nr+tk g+Wkatg d++++++ +++ +glkk 25673 3 LPGFRFHPTDEELVGFYLHRKVQHKTLPF-EVITQLDIYKYDPWDLPHMAVSGENVWYFFCLRDQKYRNSTRPNRVTKGGFWKATGPDRAIYTSdGSKCIGLKK 105 69***************************.99***************77778899*************************************9966677***** PP NAM 105 tLvfykgrapkgektdWvmheyrl 128 +Lvfykg+a kg+ktdWvmhe+rl 25673 106 SLVFYKGKAAKGTKTDWVMHEFRL 129 **********************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 54.867 | 2 | 158 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.45E-58 | 3 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.5E-27 | 4 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 161 aa Download sequence Send to blast |
VILPGFRFHP TDEELVGFYL HRKVQHKTLP FEVITQLDIY KYDPWDLPHM AVSGENVWYF 60 FCLRDQKYRN STRPNRVTKG GFWKATGPDR AIYTSDGSKC IGLKKSLVFY KGKAAKGTKT 120 DWVMHEFRLP VLGSTKDPSK KRPPVFEESW AVCRIFKKRS M |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-51 | 4 | 160 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-51 | 4 | 160 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-51 | 4 | 160 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-51 | 4 | 160 | 19 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-51 | 4 | 160 | 22 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-51 | 4 | 160 | 22 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-51 | 4 | 160 | 22 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-51 | 4 | 160 | 22 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-51 | 4 | 160 | 22 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-51 | 4 | 160 | 22 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-51 | 4 | 160 | 22 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-51 | 4 | 160 | 22 | 170 | NAC domain-containing protein 19 |
4dul_A | 1e-51 | 4 | 160 | 19 | 167 | NAC domain-containing protein 19 |
4dul_B | 1e-51 | 4 | 160 | 19 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00537 | DAP | Transfer from AT5G39820 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024530735.1 | 1e-119 | protein FEZ isoform X2 | ||||
Refseq | XP_024544176.1 | 1e-119 | protein FEZ isoform X2 | ||||
Swissprot | Q9FIW5 | 4e-78 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
TrEMBL | D8QP82 | 1e-117 | D8QP82_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ15558 | 1e-118 | (Selaginella moellendorffii) | ||||
STRING | EFJ38886 | 1e-118 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G39820.1 | 2e-80 | NAC domain containing protein 94 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 25673 |
Entrez Gene | 9643153 | 9654477 |
Publications ? help Back to Top | |||
---|---|---|---|
|