PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

24848

Common Name

SELMODRAFT_450157

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 275aa MW: 31778.6 Da PI: 6.895

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
24848	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	200.5	1e-61	2	274	98	374
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 aN +Il+ +g++r+Hi+D++i +G QWp L+q L++Rpegpp ++iTg++ + ++et+++L ++A+++g+++ef+v++++++e ++++ ++ ++ 24848 2 ANGTILDFCQGATRIHIVDYGIHYGCQWPQLIQRLSQRPEGPPAMKITGIDF----PRVDVKETERNLVEYAKSCGISLEFEVITSTSWELVQPK---THVNDL 98 9*************************************************....89*********************999999999876...5789 PP GRAS 202 laVnlvlqlhrlldesvsleserdevLklvkslsPkvvv..vveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacega 303 l+Vn+ ++l +l ++ +++r+ + + v sl+P++++ v++ ++++s+ F +rf ale + + +d +++ l ++ e+ ++++ i+n+va+eg 24848 99 LIVNCNFRLRHLREDGSVGDNPRKLFFERVYSLKPDLFIqcVMDASSNLSSPFFIQRFEGALESVFTKMDLFQTLLQEDMPEEYDFIGNIMAKTIMNMVAMEGV 202 **********866666667************983355666778999********************99997777777777********** PP GRAS 304 errerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 er er +++++W +r ++aGF++ p++ ka++ +k+ k + +++ + ++l+lgWk+r L+++S Wr 24848 203 ERLERPNSYRSWDSRARRAGFEQQPVRPKAVELVKAAWCSSKpNCNFKMGMDGNWLLLGWKERVLYAMSTWR 274 *******************************99988887888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	31.112	1	253	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.5E-59	2	274	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
FANGTILDFC QGATRIHIVD YGIHYGCQWP QLIQRLSQRP EGPPAMKITG IDFPRVDVKE 60 TERNLVEYAK SCGISLEFEV ITSTSWELVQ PKTHVNDLLI VNCNFRLRHL REDGSVGDNP 120 RKLFFERVYS LKPDLFIQCV MDASSNLSSP FFIQRFEGAL ESVFTKMDLF QTLLQEDMPE 180 EYDFIGNIMA KTIMNMVAME GVERLERPNS YRSWDSRARR AGFEQQPVRP KAVELVKAAW 240 CSSKPNCNFK MGMDGNWLLL GWKERVLYAM STWRP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	4e-20	2	274	97	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002977070.1	0.0	scarecrow-like protein 34
TrEMBL	D8S1B3	0.0	D8S1B3_SELML; GRAS family protein
STRING	EFJ21679	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP266	15	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	2e-59	GRAS family protein

Link Out ? help Back to Top
Phytozome	24848
Entrez Gene	9638654

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]