PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 235487 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24850.2 Da PI: 5.5377 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.2 | 8.2e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA EL +LCdae +viifsstgkl+ey+s 235487 9 KRIENATTRQVTFSKRRGGLLKKARELAILCDAELSVIIFSSTGKLFEYAS 59 79***********************************************86 PP | |||||||
2 | K-box | 63.3 | 8.9e-22 | 86 | 167 | 13 | 87 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK.......nellleqieelqkkekel 87 ++ +++qe+a+Lk++ie+L++++Rh++Ge+L+sL++keLq+Le+ e++ ++iR++K + ll+e++eel++k +++ 235487 86 DNDYWNQEVARLKQKIEQLENTKRHMMGEELTSLTVKELQELERMAENGYNEIRARKltlmnlqESLLMEELEELRRKVEAA 167 5789****************************************************93333333345677788888887765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.0E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.057 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-33 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.39E-44 | 2 | 74 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.1E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 8.1E-21 | 86 | 166 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.721 | 87 | 170 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010440 | Biological Process | stomatal lineage progression | ||||
GO:0048574 | Biological Process | long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008134 | Molecular Function | transcription factor binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MGRGKIEIKR IENATTRQVT FSKRRGGLLK KARELAILCD AELSVIIFSS TGKLFEYASS 60 SMKDILERYS KCPERNPSSP LDVDLDNDYW NQEVARLKQK IEQLENTKRH MMGEELTSLT 120 VKELQELERM AENGYNEIRA RKLTLMNLQE SLLMEELEEL RRKVEAAEGI GSHTLRSFTV 180 LTEARSPSET REPTTITPGA QAQDNLRDES DTSLQLR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-23 | 1 | 78 | 1 | 78 | MEF2C |
5f28_B | 7e-23 | 1 | 78 | 1 | 78 | MEF2C |
5f28_C | 7e-23 | 1 | 78 | 1 | 78 | MEF2C |
5f28_D | 7e-23 | 1 | 78 | 1 | 78 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00410 | DAP | Transfer from AT3G57230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024517802.1 | 1e-142 | MADS-box transcription factor 23 isoform X1 | ||||
Swissprot | Q9XGJ4 | 2e-51 | GGM13_GNEGN; MADS-box protein GGM13 | ||||
TrEMBL | D8SY56 | 1e-138 | D8SY56_SELML; MADS-domain transcription factor | ||||
STRING | EFJ10734 | 1e-139 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 3e-49 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | 235487 |
Publications ? help Back to Top | |||
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